BAC Information

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BAC

Clone NameMSMg01-308F03
Chromosome9 (Build37)
Map Location 46,790,143 - 46,790,375
singlet/doubletsinglet
Overlap genenone
Upstream genePafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik
Downstream geneD930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308F03.T7 (MSMg01no308_f03.b1)MSMg01-308F03.TJ (MSMg01no308_f03.g1)
ACCAG432434AG432435
length731769
length of high quality
(start - end)
233 (103 - 335)---
definitionCHROMAT_FILE: MSMg01no308_f03.b1 PHD_FILE: MSMg01no308_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:36 2005CHROMAT_FILE: MSMg01no308_f03.g1 PHD_FILE: MSMg01no308_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATATGGAGAGGATCCGCGGAATTCAGCTGATTTCGAAATTGGAC
CTGATGACATCACTATCCAGTTCTACCCATACTGCGTTTGATTAATTGCT
AGAGCCAAACAGAAAGTGTAGAGATTCCGTACCATGAAACTACCAGGACG
GGTATCACTTTATGGTGGTAAGTGGTCTAGCCCCCAACCTGGAGACACAA
AGGGTCAAAAGTTTCTCAGCTGCTAAAACCCAGGTTGGATCACTGTACTT
GGTCCCCAACACGGTCCATCTCAACTCCCTAGGGTCTGAATATGCAAATC
ATGGCTCAGCAGGTGCCAAGCAAGGATTAAGAAGCTTTAATGGATTTAAC
CCCCCCCCCCATGTTAACTCTGCTGGTCCCTGAGCAAACTACCCCCCCAC
AAAAAAAATAAAATGTTTGTGGGTAGCAGTCCTGATGTGGCCCTACTGTA
CCCAGCTCAAGAGGCACACACAGTGTGAGACAGGAACAAAGCTCTGGTGG
TCCATCTATGCCTCTGGCCTTTAGAGCATATGGGTTAAAGGAGGGAATGT
GGGGGGAAAGTTTTCTTGCTCTGTTTTTTCTTTTCTACCTCTCTCATCTT
TTTTTTCCCGACGCCCGCATAGTTGTTTTATATACACCTAAAAACGTTTA
ATATGCCTCCCGGTGCCCTGACTCTAAATATTCAAAAGTATACCCGCATC
CTTCGATTACCGTATCCCTACCTCTTTTCCG
CCTTTCCCCCCCCTTNCCCTCAACATTTANNTNACACTATANAANNATCC
NCNNAATTCCANCTTCCTNCNANAATAAATACAATNAAANCNNTNTTNTA
AAATAACTCACAAAAACCTATANNAACCTAAAAAAACTATAACCCTANAA
TCTCATTTNNATCCACTANNACACNANTAAAAAATAAATATAATCCAAAC
TCCTCACCCTCTNTANTTCCCCANCACCACAACCTTTCCCCACCCCTAAT
AANNNCTCCATNTAAATTCTAACCTATCCTCCNNNTCAACCTACATCTCA
TAACNCTTTTACTCTTNANACNCNCCCTATACTATCCNNANCATATTCNA
ATTTTCTCANTCCCTTTCCCCCCCCTTTTCTTACCCNTNTTTCCCTTCTA
TTCTTTTACCCCCCCCCAAAAAAAAAAACCAACCTAAATTCCCCCCCCCC
AAACTTTTTTNAATAAAAACCTTCNNCNTTCCTCCCTCCCTCCCCTATTT
AAATAAAAAAAAAAAAAATACCNNTATTTTAATAAAAAATAAAAACCNNN
NCACACTCCCAACAATTTTTTTNTTTNCTNCTTTTTNTACTTNNNNNNNN
NNNNNNNTTNNTTTACACCTAATNNNNATTTCTCNTTNNTCCCCTNNCCT
TTTCTTTCACTTCTANAAATATTCACCCCCCACTACCCCCAAACTCTTAA
AAAAAACACTTTTTCCCCCCTTNCCAACTTTTAAAAAAAATAAAACCACC
TCCNNNCTTATTNTTNTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_f03.b1 MSMg01no308_f03.b1 CHROMAT_FILE:
MSMg01no308_f03.b1 PHD_FILE: MSMg01no308_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:36 2005
         (233 letters)



>mm_chr9_46789943_46790575
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccaaacagaaagtgtagagattccgtaccatgaaactaccaggacgggtatcacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccaaacagaaagtgtagagattccgtaccatgaaactaccaggacgggtatcacttta 260

                                                                       
Query: 61  tggtggtaagtggtctagcccccaacctggagacacaaagggtcaaaagtttctcagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggtaagtggtctagcccccaacctggagacacaaagggtcaaaagtttctcagctg 320

                                                                       
Query: 121 ctaaaacccaggttggatcactgtacttggtccccaacacggtccatctcaactccctag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaaacccaggttggatcactgtgcttggtccccaacacggtccatctcaactccctag 380

                                                                
Query: 181 ggtctgaatatgcaaatcatggctcagcaggtgccaagcaaggattaagaagc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctgaatatgcaaatcatggctcagcaggtgccaagcaaggattaagaagc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)