BAC Information

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BAC

Clone NameMSMg01-308M17
Chromosome9 (Build37)
Map Location 50,655,491 - 50,655,763
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9
Downstream genePpp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308M17.T7 (MSMg01no308_m17.b1)MSMg01-308M17.TJ (MSMg01no308_m17.g1)
ACCAG432770AG432771
length796756
length of high quality
(start - end)
276 (46 - 321)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no308_m17.b1 PHD_FILE: MSMg01no308_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:13 2005CHROMAT_FILE: MSMg01no308_m17.g1 PHD_FILE: MSMg01no308_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAGCTGTCCGACCCAGGGCAGATCTCAGCTTTAAATATTATTT
GCCACTTAATATCTGGCCTGAATGTGTGAATACAAACCCAGGTTGCGGTT
GGACATCTTCTACAAAGGACAGGGGACAGGGAGGACCTAATGGCTCCCCA
CACCTACAGGACAGGTTTGCTAAGCCAGACTCATTCAAAAGGTCATCTGT
GCCAAGTCTGGCCCTCCAAAATCAGGAAACATACAAATGTAAATATGTCG
TGAAGCTTTTCAGATGCAATCCTGTTGAATGTGCTCTCATGACAAAGTCT
GGAGTTCGGAACTGCTAGGCTATGCACACGCACACACATACGCACACACA
CATACACACACTTGTTCACCCCCCCCAAGAGCTGCCCTTGGAGTCCTCAA
GACTTCTGATTTGCTGCATTTTCTGTTCTAAGAATTCTGATGGAGATGCT
AAGCATGTTGACTCTCGCTGATGGCCACTCAGGCACGCTCGATTTTCCAC
TGCTTGTGATTCCTTAAGCCTGTTCTGGGCCTACTTACTGTACTTCTTGG
CTCTCGCCTAGTCTTTCACACCGGATCTCCTTGCCCTATTATCCTTTGTT
ATATTTATATTTTCTCGTGCCCGACTTTGATATTCTTCTACCCCTGCCTG
TCCATTTTTTCCGGACTAACGCTTTCTTACTTATTTTGTTTTCCCATTCG
CTTCACCTTCTATTTTATATATACTACCCTTACTCCTGCCCTCCCN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTGTATCCTAGGCTGGACTCAAAC
TCAGAAAGATCTATCTGCTTCTCCCTCCATACAGCATTTTGCTCTGATAA
AGTTTATTTTTATTTTTAATGTCTCTGCGTGGGCTTGTGCATGTGACTTC
AGTGCCCACAGACACTAGAAGAGGGTGTTGGATAGCCTAGAGATGGAATT
AATCCAGTCACTGTCTGACGTGGGTGCTGGGACACAAACTCAGGTATTCT
GTAAGAGCGGTACACACTCTTATCAGCCAAGCCATCTTTCCTGTGTGTGT
CTGTGTGTGTGTGTTTGTGTGCGCCCCCCCCCGCGCTTTTATGCTTGCTT
GCCCTAGTATACCCCCCCCCTCTTGTGAAAAAAAAAAAAAATATTTAGGT
TTCAGGTCTTTCCTTCCATATGTGTATTCTAGATGCTACTCATAATTTCT
ATCTTTTTCCGCCCTCTCTTCTTCTGTATTCTCACCTTCCCACATCCCTT
ACTTATTCCTCCATTTTCTTCCCCCCCTCCCCTTTTTTTCTTTTTTTCCT
TCATCCCTCCCCTCTACCCCTCTCCTTCTTTTTCCTATCCTATATCTTAC
CTTTTCACATTCTCTTTTTTTCTTTTTTTCCTTCCCCCTATCCCATTTAT
CTCTATATTTACAACATTTTTTTATTTCCTGCCATTTTATATCTCCAATA
TATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_m17.b1 MSMg01no308_m17.b1 CHROMAT_FILE:
MSMg01no308_m17.b1 PHD_FILE: MSMg01no308_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:13 2005
         (276 letters)



>mm_chr9_50655288_50655963
          Length = 676

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacagctgtccgacccagggcagatctcagctttaaatattatttgccactta 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattccacagctgggagacccagggcagatctcagctttaaatattatttgccactta 417

                                                                       
Query: 64  atatctggcctgaatgtgtgaatacaaacccaggttgcggttggacatcttctacaaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atatctggcctgaatgtgtgaatacaaacccaggttgcggttggacatcttctacaaagg 357

                                                                       
Query: 124 acaggggacagggaggacctaatggctccccacacctacaggacaggtttgctaagccag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acaggggacagggaggacctaatggctccccacacctacaggacaggtttgctaagccag 297

                                                                       
Query: 184 actcattcaaaaggtcatctgtgccaagtctggccctccaaaatcaggaaacatacaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 actcattcaaaaggtcatctgtgccaagtctggccctccaaaatcaggaaacatacaaat 237

                                            
Query: 244 gtaaatatgtcgtgaagcttttcagatgcaatc 276
           |||||||||||||||||||||||||||||||||
Sbjct: 236 gtaaatatgtcgtgaagcttttcagatgcaatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)