BAC Information

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BAC

Clone NameMSMg01-308M22
Chromosome9 (Build37)
Map Location 23,192,938 - 23,193,154
singlet/doubletsinglet
Overlap geneBmper
Upstream geneAnln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308M22.T7 (MSMg01no308_m22.b1)MSMg01-308M22.TJ (MSMg01no308_m22.g1)
ACCAG432779AG432780
length719717
length of high quality
(start - end)
219 (428 - 646)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no308_m22.b1 PHD_FILE: MSMg01no308_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:13 2005CHROMAT_FILE: MSMg01no308_m22.g1 PHD_FILE: MSMg01no308_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTAGAGAATCCGCG
GAATTCTCAAATATTTCCTAAAAATATTGTTTTTTTTTTTAATTAAAATT
TGGATAATACTGACACCACTATGACATAGGACCACAGGTAGAGTGTCGAG
ATGATTGTGAGTGTGCACAAGAGGAGGCAAGATGTCAAATGGCAGATCCA
GTGTGTAAAGACATGCTCTAGCCTAGAAGAGGAAGGTGGCTGGGGGGCAG
GGCATGAATAATATGAATTGCATACCAGCAAGAAACACCGTGCATACAGT
GAGCCATTTCTGCAGATCTCTGTTTTTATGACAGCTGATATAAAATAACC
CAAGAGGTCACAAAAGTTAAGGTAACTTTCCAAACACAGTGTTTCTGAAG
GTGAATGGGCACAATGGCTCCGCCCCACAATTCTTTGTCATGTGTGAAAG
AAGAAAACTGGTAAATCTCATGTATTTAGAGGCATACCTCCAAAAACATG
AGTCACCATACCGTCAAAAGAGAACACAGGGTTAGTTATGCTTAAAGTTT
GGGTTCTAAGTTCTAGCAGATTACAGTATGAGCTGACTTCTCTCTGTTTA
TCTTCTCTGGCCTTCAGATCCTTTCATTGATGGAGCTGATGGTAGTTTCC
ACTTGGCAGAAACTTCCTGAGAATTAAATAGCAGAATGTGTAGACAGTAT
GTGCTATAAGCCCTGCTCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCTCAGAATCAACAAAAAAA
AGGTGGTATGTGTCTGTGACCTGTGTGCCCAGGGGTAAGGTGGAGTGTTT
GAGACAGGCAGTTCCCAGGGCTCACTGGCTAGCTAGTCTAGCTGAAACAG
CAAGTTCCAGGTTCACAGAGTAAGCATGTCTCAAAATATAAGGGGAGGGC
TGGCACAATGGCTCAATAAGGAAAGGTGCTTGCGGCGGACCCTGATGACT
GGACTTTAGCCCTAGGAACTCACATTTTTTAAGAGAACTGACTCCTGGGT
TCCTCTGATCTCTTTGTTGNGCCCCGGAACGNTACCACGGNTTGAAATAC
ACATATACTCACAGGGGGGCCCCCACACACAATNTAAAAATCGGGGGGGG
TGGGGTGGGGATCACACACACTAAATGTCTTATCATCATATAACTAATTA
CAATGAAAATCTATTGAGGAAGACATTTCAAGTGTCTTCTGGCTTCCATA
TGTACATATATGGATTATTGAACAGACACACACACACACCCCCTCTCCCC
TTCCGCCCCCCTATCCCCTACAAATAATGACCTGATACTTCCCTCACAAA
AGTATTATTGTTCGCCCCATTCCCCCGCCTTAATTTCTCACCTATCGGAT
GTTATCTTCCCGTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_m22.b1 MSMg01no308_m22.b1 CHROMAT_FILE:
MSMg01no308_m22.b1 PHD_FILE: MSMg01no308_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:13 2005
         (219 letters)



>mm_chr9_23192737_23193355
          Length = 619

 Score =  420 bits (217), Expect = e-122
 Identities = 217/217 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   aattctttgtcatgtgtgaaagaagaaaactggtaaatctcatgtatttagaggcatacc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aattctttgtcatgtgtgaaagaagaaaactggtaaatctcatgtatttagaggcatacc 359

                                                                       
Query: 62  tccaaaaacatgagtcaccataccgtcaaaagagaacacagggttagttatgcttaaagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tccaaaaacatgagtcaccataccgtcaaaagagaacacagggttagttatgcttaaagt 299

                                                                       
Query: 122 ttgggttctaagttctagcagattacagtatgagctgacttctctctgtttatcttctct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttgggttctaagttctagcagattacagtatgagctgacttctctctgtttatcttctct 239

                                                
Query: 182 ggccttcagatcctttcattgatggagctgatggtag 218
           |||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggccttcagatcctttcattgatggagctgatggtag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)