BAC Information

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BAC

Clone NameMSMg01-311N11
Chromosome9 (Build37)
Map Location 29,443,131 - 29,610,896
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311N11.T7 (MSMg01no311_n11.b1)MSMg01-311N11.TJ (MSMg01no311_n11.g1)
ACCAG434226AG434227
length793753
length of high quality
(start - end)		314 (45 - 358)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no311_n11.b1 PHD_FILE: MSMg01no311_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:48 2005CHROMAT_FILE: MSMg01no311_n11.g1 PHD_FILE: MSMg01no311_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,610,587 - 29,610,896)(29,443,131 - 29,443,415)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAATGAAATCCCTCTCTTCCCCCAGTCCAAGTGAACAGCTGGCAG
GAGATACTGATAGCAAGGAAAGAAGTCGTCACTTTGTTGGATGTTATCCT
GAATAATAAGTGAACTGCTGACGACATTTCTGAGAGCTCCAGAAAACTGC
CACCATCCAGCCTCTGCCACCACCTGGCCGCTCAGCAGAGCAAGCAGTCT
CTGTGCAGCTCGAAATGTGGGTGATCTAGAATAGATGCTAAAGGGGAAGT
TGGGTAAATGTTGGGACATCTAATTTCTGATACGGAGACAGCCCTATATA
CATGCACAAGTTTTCTCATTTCTCCACCCCCCCCCCCCTGAGATATCCAT
GAGGTACTCATGTACGCCCCCCCCCTCTAAAAAAAAAAAATACTTTTGTG
GGGGGGAGCTTGCTGCAATCACTAGATAGATTATTAAGAATATCTGAAAC
TTGCGCACCTCTTCTGTACTTTGTCTATACTAGTTTTACTAAACACCCTG
TTAACCCCTATATCCCCCTGTTGCGGACGTCCTACAAGTCCGTTCCCAGC
CCCCTCAATGCATTTATGGTGCCTCTTATTTCCCGTTTCACCATATCTCT
TGATACATCTATCGTCCCCTCACCTTTTCTTTTTATTCTTTCACGCTTTC
GCATCCCCTTTTGCCTCACGTTTTTATCTCTTCCTCCAATTTGTTCTTCT
TGCCATATTATCCCATTTCACCCACTTTTCTCCCATATTCCTT

TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGATGTCTTCCGCATCACTAACT
TTGCCTTTGTAAAGAGAAGGAATGAAGTGTATTACAGAAGGAGGGTCTGA
CACATCGGGGGACTCAAAGGCTGGATCGACCCCCGGTGAAGCCGAAATGG
GGAACCTGGTGTCAGAGACTGAGTTCCTGAAGAAACTCTCCTAATATCTG
GGCTGATGGAGAGAAAGGGCTAAGCTCTGTCTCGGGAAGAAGGTTAAGTA
TTCAAAGGAAGGCAGCTGGAAGCTTGTTGGGAGAGCAAAGCTCTGCCCAC
AGACAGACAGTTTTATTGNNTTCCCNGGCCGNACCACGTTCTGCCTGCCA
TCCACCTTGTCCGTCTCCCCCCTTTCCAAAAAAAAAAAAGGACTCGTGTG
GGGGAGCAGCCATGAATTTGTTTGAAACTTCATCTCCTTCAGCCCTAATG
ACACACCATTAAATTAAGAAATATAAAGACCCTTAACATTGACAGGTTGA
AAGTGTATTTGCTGTAAGGAGGATGGAGGAGCAGGGAAATACCCCTTTTT
TTATCACAAATGTACTGAACCTGTCAAGGGATTTCCAACATATATAAGCC
ATAATTTAATATCCCTGATTGCGAAGTTCTCTTCTTTAAAAAAATAAAAA
GGACCGCGTCTATACGCGCATAACTCTTAGCTTGCCCCAATTACGATTGG
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_n11.b1 MSMg01no311_n11.b1 CHROMAT_FILE:
MSMg01no311_n11.b1 PHD_FILE: MSMg01no311_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:48 2005
         (314 letters)



>mm_chr9_29610383_29611096
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaatgaaatccctctcttcccccagtccaagtgaacagctggcaggagatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcagaatgaaatccctctcttcccccagtccaagtgaacagctggcaggagatact 455

                                                                       
Query: 65  gatagcaaggaaagaagtcgtcactttgttggatgttatcctgaataataagtgaactgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gatagcaaggaaagaagtcgtcactttgttggatgttatcctgaataataagtgaactgc 395

                                                                       
Query: 125 tgacgacatttctgagagctccagaaaactgccaccatccagcctctgccaccacctggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgacgacatttctgagagctccagaaaactgccaccatccagcctctgccaccacctggc 335

                                                                       
Query: 185 cgctcagcagagcaagcagtctctgtgcagctcgaaatgtgggtgatctagaatagatgc 244
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 334 cgctcagcagagcgagcagtctctgtgcagctcgaaatgtgggtgagctagaatagatgc 275

                                                                       
Query: 245 taaaggggaagttgggtaaatgttgggacatctaatttctgatacggagacagccctata 304
           |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||
Sbjct: 274 taaaggggaagttgggtaaatgttgggacatcgaagctctgatacggagacagccctata 215

                     
Query: 305 tacatgcaca 314
           ||||||||||
Sbjct: 214 tacatgcaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_n11.g1 MSMg01no311_n11.g1 CHROMAT_FILE:
MSMg01no311_n11.g1 PHD_FILE: MSMg01no311_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:48 2005
         (286 letters)



>mm_chr9_29442931_29443616
          Length = 686

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgatgtcttccgcatcactaactttgcctttgtaaagagaaggaatgaagtgtattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatgtcttccgcatcactaactttgcctttgtaaagagaaggaatgaagtgtattac 260

                                                                       
Query: 61  agaaggagggtctgacacatcgggggactcaaaggctggatcgacccccggtgaagccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaggagggtctgacacatcgggggactcaaaggctggatcgacccccggtgaagccga 320

                                                                       
Query: 121 aatggggaacctggtgtcagagactgagttcctgaagaaactctcctaatatctgggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggggaacctggtgtcagagactgagttcctgaagaaactctcctaatatctgggctg 380

                                                                       
Query: 181 atggagagaaagggctaagctctgtctcgggaagaaggttaagtattcaaaggaaggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggagagaaagggctaagctctgtctcgggaagaaggttaagtattcaaaggaaggcag 440

                                                        
Query: 241 ctggaagcttgttgggagagcaaagctctgcccacagacagacag 285
           ||||||||  ||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctggaagcacgttaggagagcaaagctctgcccacagacagacag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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