BAC Information

Click to search

BAC

Clone NameMSMg01-312D09
Chromosome9 (Build37)
Map Location 46,663,628 - 46,663,938
singlet/doubletsinglet
Overlap genenone
Upstream geneBace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
Downstream gene2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D09.T7 (MSMg01no312_d09.b1)MSMg01-312D09.TJ (MSMg01no312_d09.g1)
ACCAG434493AG434494
length774737
length of high quality
(start - end)
317 (38 - 354)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no312_d09.b1 PHD_FILE: MSMg01no312_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005CHROMAT_FILE: MSMg01no312_d09.g1 PHD_FILE: MSMg01no312_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
ACTCACGGCCCAATGGGGACCACCCAAGAGGATAAATCCTCACCACCACC
ACCACCACCAGTATATTCTCTGAAAGACAGGAATTCTCAGTGCTTCTACT
ACCTAGGGTCACAACTAAACTAGTACACACACTATTCTGTCTCTTTCCAA
GCCTAGTTCATACAATTATTTGGTGATGAAGACATTTGAGACAAACATTG
GCCATAGAGGGAGAAGGGCTGGTCCTAGATGATTAAGTAATATCACTAAT
AAGTGTCCCACTACATTTAGCCTGTAAGCCTCTGACACACATAAGACCTC
AACATTTTTTTTTGGCCCCCCCCCCCCCTAAACGGGAGGCTTCAACAGAA
TCCTCAGATCCCCACCTGAAAAAAATAAAATCTAGTCTGCCTTGACGACT
GATCTTATTCTATCTCACCTTCTGTAGTATAATTATAACCATATTATATT
TTTTTAATTCTTTTTACATAAAACTCCCGTTATTCGTAGGTAATTATTAT
TGATCTCCGGCACTTCTTTTATCATGAGTAATGGTATACGTTTGCGTGCC
TCCTTCTTAAACCCTATTTTCTGTTTTAACCCTTGATTGCCCCAGCGTTA
TCTTNACTTAACCGACCGCCTGCCCTCTTACCATGAATATCTGTAAATTT
GCTACCCTTCTTAATCGCTTTACCTCCTTACTCAATACCTTTACCCATCT
TTATATAAATTGGTAACACTTTAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTATTAAGCCAGTTTTACTGTTATCTAAAAC
CAGATAAGAACCCACCAAAAGACTATGAGCCAAAAAATTCTCGACAAAGT
AGTATCAAGTCAAATCCAAGAACACAGCAAAAAGATCATATATCCCAGTC
AAATGGCATTTAGCTCAATACACCTAGATAAAATATGCATAACATTAACA
GGATTAAGAAAGAGAGTACCTTATTAGCTGCAGAACATGTACTTGATGAA
GTTCAGCATCCTTTTTTGATAACGAAGATCTCAGAAATAAAATATAGAAG
AATTTCAACTGGATTCCCNTGACGNATACCCTGAAAAGGTCAAAGTTGAC
TTCCTAGTCCGCCCCCCAAAAAACTTATTAAAACTTTGCGGGGGGGAGGA
GCCTAAGAATTTTATCATCTTTACCATTCTTATTTGACTAATTACCAGTA
GTGCTAGTCAGAACAATAATTCATTAATACATAAATCATTGGTAACTTAA
TTTGGTATGGATGAATTCCAATCGCCCCTGTTTTGCGATATTTGTATTAT
GTATCGAATAACTTCTAATCTGATAGAATGGATTAATTCATTTATCTCGT
AATACTCTTTCTCCTATTTGAATGCATCATTTTTCTTTGTCAAATTAACA
CTTCCGTGATCATGTTTTTCGAAAGTACACCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d09.b1 MSMg01no312_d09.b1 CHROMAT_FILE:
MSMg01no312_d09.b1 PHD_FILE: MSMg01no312_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:14 2005
         (317 letters)



>mm_chr9_46663351_46664067
          Length = 717

 Score =  530 bits (274), Expect = e-155
 Identities = 303/314 (96%), Gaps = 3/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacactcacggcccaatggggaccacccaagaggataaatcctcaccaccacc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 588 ggaattccacactcatggcccaatggggaccacccaagaggataaatcct---caccacc 532

                                                                       
Query: 64  accaccaccagtatattctctgaaagacaggaattctcagtgcttctactacctagggtc 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 accaccaccagtaaattctctgaaagacaggaattctcagtgcttctactacctagggtc 472

                                                                       
Query: 124 acaactaaactagtacacacactattctgtctctttccaagcctagttcatacaattatt 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 471 acaactaaactagtacacacactattctgtctctttccaagcctagctcatacaattatt 412

                                                                       
Query: 184 tggtgatgaagacatttgagacaaacattggccatagagggagaagggctggtcctagat 243
           |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 411 tggtgatgaagacatttgagacaaacattgaccatagagggaggagggttggtcctagat 352

                                                                       
Query: 244 gattaagtaatatcactaataagtgtcccactacatttagcctgtaagcctctgacacac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 351 gattaagtaatatcactaataagtgtcccactacatttagcctgtaagcctcaaacacac 292

                         
Query: 304 ataagacctcaaca 317
           ||||||||||||||
Sbjct: 291 ataagacctcaaca 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)