BAC Information

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BAC

Clone NameMSMg01-312J07
Chromosome9 (Build37)
Map Location 13,396,727 - 13,396,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758
Downstream geneMaml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J07.T7 (MSMg01no312_j07.b1)MSMg01-312J07.TJ (MSMg01no312_j07.g1)
ACCAG434758AG434759
length726747
length of high quality
(start - end)
188 (132 - 319)180 (73 - 252)
definitionCHROMAT_FILE: MSMg01no312_j07.b1 PHD_FILE: MSMg01no312_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:41 2005CHROMAT_FILE: MSMg01no312_j07.g1 PHD_FILE: MSMg01no312_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGAAAGGTCTGGTCTTGCTGCAGGATCTTCATGGCAAAGGACCATAG
CAGGATAACCAGGATTTTTCCCCCGTGAAGATCCAGTAGTGATGCTGTTG
AAAGGCCAAACCTTTTAAGTTCAGACTCCATTTTAGAGAACCTGACCTAA
GTTTGAACTCAGATAAACTAACAGGCTGGTACCTAGCATTAGTTTCCAAG
TTATTCCCCCAACAAAACCTGCACCTCCAGGTTACAAGGCCCCCCCTTGC
CTAATGCCACCCATGTAGAATGTATCAGAAATTTAAGTTTATATGACTCC
CAGCACCAGTTTANGNATGCATCCCCGAACGGACCCCTTCCAATTATATG
TTTGCACACTTACCACCCCCCCCCCCTAAAAAAAAATGTTTACTATGGTG
CCTCGATAGATATTCCGTCACACACACACCCCATAATAAATATCCTTGTG
TGATGGTGCTGCCCTGTGGATCACCTGATCTATCTCGTATATACTATAGA
CCTTGCTGTGAGTTGCATCAAATTGTCCCCGTCTGTGTCTTTGTATGATC
TTTATATTTGTGATAGTAAACAAACTACTTGCTTTCACAACACCGAATTT
TGCCATGACTTTTTTCCTTACAAAAACCCGTTGTTCCGATACCATTTGTT
TCCGTTATTCTCTGTTGAAAAATTAT
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTCCCCTTTACAGGGTGGAAGCCAT
AAGCACATGGAACAGTGTCCCAGGCGGCCACAGAACCAGGGTGATGTGGA
GTGTTGAAAGTGTCCCAGCCAAGGGATGAGTTCTGCTCCTGGTTTACAGA
ACATCACTAAACTCTTACTAGATACCAGACAATGTGTGAGGTATTGAAGA
CATGGGGGAACATCCAGACCAAGAGAACATCAATCATGTGCAGATGCTGA
CAGACATGCGGTTACTACATATAGACTTTCAGTGACTCCTGAACATATAT
ACAATTCTTTTTTTTTTTCCTCCCCGCTCCCCAAAATGTCTTTGGTTCCT
GCCTCGTGGTATGGCCCACCATAAAAAAAAGAACATTGATGGTAGAGCCC
TTAGATAGTTTATTTCCAGTCATGATTTTAGTAAGAGATCATGAATGTCT
GAAATGGTAATCTAACTCACCTTCTTCGTTACATCCCAATCTTCCTTGAT
TGCCTTTTCGCACAAGTGCATTTCTACATTTTTCGGTATTGCTCCTCTAC
CAGATTATTGACTTACTAATGATGGATATTTAGCTTTTTCTGAGGTTTAT
CCTCATTGCTTTTTTATTGACCCTCCCTCCTTAATGCTCTTTGTTTCACC
TCATTCACATTATGCCCATGTTTTTCGGACTCATGATCACCGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j07.g1 MSMg01no312_j07.g1 CHROMAT_FILE:
MSMg01no312_j07.g1 PHD_FILE: MSMg01no312_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:41 2005
         (180 letters)



>mm_chr9_13396527_13397106
          Length = 580

 Score =  317 bits (164), Expect = 2e-91
 Identities = 176/180 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtcccctttacagggtggaagccataagcacatggaacagtgtcccaggcggccaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 agtgtcccctttacagggtggaagccataagcacatgggacagtgtcccaggcggccaca 260

                                                                       
Query: 61  gaaccagggtgatgtggagtgttgaaagtgtcccagccaagggatgagttctgctcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccagggtgatgtggagtgttgaaagtgtcccagccaagggatgagttctgctcctgg 320

                                                                       
Query: 121 tttacagaacatcactaaactcttactagataccagacaatgtgtgaggtattgaagaca 180
           || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ttcacagaacaccactaaactcttactagataccaggcaatgtgtgaggtattgaagaca 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)