BAC Information

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BAC

Clone NameMSMg01-312O08
Chromosome9 (Build37)
Map Location 33,134,952 - 33,135,225
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312O08.T7 (MSMg01no312_o08.b1)MSMg01-312O08.TJ (MSMg01no312_o08.g1)
ACCAG434983AG434984
length719725
length of high quality
(start - end)		672 (48 - 719)274 (88 - 361)
definitionCHROMAT_FILE: MSMg01no312_o08.b1 PHD_FILE: MSMg01no312_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:05 2005CHROMAT_FILE: MSMg01no312_o08.g1 PHD_FILE: MSMg01no312_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCACCTCTGAGCCCTATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTGTTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTT
ATGAGGTCCTATTTATTGATTCTAGATCTTACAGTATGAACCATTGCTGT
TCTATTCAGGAACTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTGA
ATCCACATAGATTTGACCTTAATACAAGGAGATAGGAATGGATCAATTTG
CATTCTTCTACCTGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAA
TACTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATAAGTGTGTGGGTTCATCGCTGGGTCTTCAATTCTGTTCCATTG
GTCTAATTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTG
CTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATCTCACCAGAGGTTCTT
TTATCCTTGAGGAGAGTTT

ATCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTTCATTCA
GATAACTGAGAGAAGAAGATAGATACATATGAATCATGGGCTCACAGCAA
CTGCAGATGTCTGTATTGAGCATGCAGAAAACTGGCTCTGTCCAGTGATC
TGTCATGGATGGAGCAGAGGCTCATTAGGCCCTCCCTCTTACCCCTGAAC
TACTGGCTAGGAGGAGACTCTGGGATGTGGGGCAACACTGTTTTCAATAG
TTCATAGGAAGCTTTACCCATCAGGCTCCAAACCCGTGATCACACAGTAG
GCCCTGATTAATTTTTTTGAATCACCCACCCCAATAACTAATTATGAACG
TGAAAAGGAGATTTGGGGGGAAGAAGGAAAATAAACGGGGAGGTAAGAGA
GGGTAAGAGATGAGAGTGTCAATATGCATTATGGACATATGTAAAACTGA
AAAATAGTTTCTAAAAAGAAAAAAAAGGATAAGGCGAAGCCACACTAGAT
ACTTAAAGCAAGGCTGTTTAAATGGTTTCTACCTGAAATCTTCTTTTGAA
AAAGAATTTTTTTATATCTTACTACAAAAGACATATGTAAAACAGTTATA
CAAATAAACATATTCTGATATTCTGATAATGAATCATAACTAAATTCATT
TTAAAAATAAATATTTGAGGCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_o08.g1 MSMg01no312_o08.g1 CHROMAT_FILE:
MSMg01no312_o08.g1 PHD_FILE: MSMg01no312_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:05 2005
         (274 letters)



>mm_chr9_33134582_33135255
          Length = 674

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcttcattcagataactgagagaagaagatagatacatatgaatcatgggctcacag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 644 cttgcttcattcagataactgagagaagaagatagatagatatgaatcatgggctcacag 585

                                                                       
Query: 61  caactgcagatgtctgtattgagcatgcagaaaactggctctgtccagtgatctgtcatg 120
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 584 caacttcagatgtctgtattgagcatgcagaagactggctctgtccagtgatctgtcatg 525

                                                                       
Query: 121 gatggagcagaggctcattaggccctccctcttacccctgaactactggctaggaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gatggagcagaggctcattaggccctccctcttacccctgaactactggctaggaggaga 465

                                                                       
Query: 181 ctctgggatgtggggcaacactgttttcaatagttcataggaagctttacccatcaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctgggatgtggggcaacactgttttcaatagttcataggaagctttacccatcaggct 405

                                             
Query: 241 ccaaacccgtgatcacacagtaggccctgattaa 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 404 ccaaacccgtgatcacacagtaggccctgattaa 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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