BAC Information

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BAC

Clone NameMSMg01-313H03
Chromosome9 (Build37)
Map Location 30,140,695 - 30,141,137
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313H03.T7 (MSMg01no313_h03.b1)MSMg01-313H03.TJ (MSMg01no313_h03.g1)
ACCAG435371AG435372
length1,2931,260
length of high quality
(start - end)
734 (80 - 813)368 (473 - 840)
definitionCHROMAT_FILE: MSMg01no313_h03.b1 PHD_FILE: MSMg01no313_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:08 2005CHROMAT_FILE: MSMg01no313_h03.g1 PHD_FILE: MSMg01no313_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTTNNNNNNATCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTATGCACAAGTTTGGGGCTTTCTTTGACTTTCTCCATTTCTAAAC
TTGTATTTTAAATTTGCAGCTTCTTTAACACCTTTGATTCCCACTTGGGT
GCTTCAAGTTGAAAAGACTGTGATTCTCTGCTTGCATTCTAGATAATGCA
TACATGTGACCTCAGTATATGTACAGAAAATAGAGCCATAATGAAAGATT
TATATGTTAACATGGCTGACTGGCTAGACTACCCAACAATTCAATCAAAT
ACATTAGTAAGGTTTGCTGGGGAGGGAGTATGCAAATGTGGTTAGTCAAT
TCTACTTAATCTTAAGTATGAGGATATTCTCTGTAGTATTGGTAAACCTC
ATTTGATCAGATCAAAAGTCTCAGAACAGAGGTTTCCATGAACAGGAAAT
TCCGTCTTAAGACAAACATTAACTCCTGACTAGGGGTTTTCAGGCCTCCA
AAATCCTACAGTTATGTGGCCCATAAATGTCTGCTTTTGAATCTCTTTAT
GCCATAAATTATATTTATACACACACACACATATCTAGACTATACAGTTG
TAACTATATGGTACTTTGTGAGGGGTTTATGTTTATGTTTTAATTTTAAA
TTACTGGACTTATGAGATCTATAAAACAAAAATACTTGTAACCTGTATGT
ACGTTCCACTTGCCCAAGGACAGATAACTTCCTAGAATGCTGAAGCCTAT
TATGCAAATAAGATAATAACCCATGGGCTTTTACTTCTGTAAACACACTT
GGTTGCCCCAACTACACAGAATATGCTTAATGCCACATAGGCAGAAAATA
TCTCGGCAGGATGTATGTTAAGGTATCTGCTTTGCCCCGATTGGACAAAT
AATGGTAGTATGTACCCTTGAGAGTCTTTCCCTTAAACACCTTTAGCTAA
TGCATTTTACTGCTATTCCCTGTAAATGTCTGTTATGAACCTGTCCCATC
CTCCCTCTTCTTGTTCCACTTTTTATTAAAAATCACCCTCAATCTTGTGC
CCCATTTTACATTTTTTTTGTCAATTCCTCATATAATCCCACCCCCCCCC
TTCTTCTTTATAAACCTTTTTCTTTTATCATCGCTTTCTTCCTCTACACG
CTCCTTCTACTCTATTTTTCTTCTCCCTCTCAACCTCATCTACCTTCAAC
AAACAATTTTATTTCTATTTCTCTTCCCCTATCAATTTCCTATATTATTT
ACTTCTTTCCTCCTCTACTTATCTACATTCATTCTCTCCTTCG
NNCCATTTNNNNNNACAGATGCGAGCCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAACCACCAGATGGAGCCCA
TGCCCAACACTGCCTGCCTGTTACAGGAACTAGAAGCTGGGTGGCTCAGA
GACCTAGGATAGAACCAAACACTACTGAACATAAAAAAGTGTCATAATTT
CTAATGATATTCTTCTATACTCATAGATAGGTGCCTAGACCAATCATCAT
CAGAAAGGCTTCCTCTGGCAGCTGATATGATCAGAAGTAGAGGCTCCCAC
CCAAACATTAAGTGAACCCAGGGAAACCCTGCAGAAGAGGGAGACAAAGG
ATTGTAGGAGTCAGGAATCAGGGTTACCAGGAGAACATGGCCCACAAAAT
CATCATAGCAGGGCTCATAGAGACTCACAAAGACTGAAGCAGCAAACACA
GAGTCTGCATGATTTTGAGCTAGTTCCTCTGCATATATGGTGTGGTTGTT
CAAATTGGGGCGTTTGTGGAACTCCTAACCGTGGGAGCAGGGCAGTCTCT
GACTCTTGGGAGAATCTATCTCAGACTCTTGCCTGCTCTAGGTGGCCTTT
TTCTCCTACTGGATTGCTTTCTCCAGTTTTGATATGAGAGTTTGTGCCTA
GTCTTATTGTATCTTGCTATGTTATGTTCTGTTGATATCAGCTAGAAACA
TGTTCTTTACTGAAGGGAAATGGAGGAGCAGTAGATCTGAGGGAGAGGAG
AAGTGGGAGACAGGATTGAAAGAAGTGCAGGGAGGGGAGGCTATGGTCAA
GATGTTTTGTATGAAAGAAGAATGGGGAAATAAACGGCATCCTCATTTAA
CAAGAACCCCATAAATATTTATTGCCTTATCCTAGGTTCCCTGGAAAACT
GAGTTCCTGTGTTGACTCTTGATTGGGAAATGGGGTAAAGGAGACCTCCG
AAACAAGAATGGGGGGAGAAAGAATGGAAACCTCCCAAAAAGGGAGTGCA
AGGCCCTGCCTAGCTAATGCTGGGGTTTGCTCCATCAAAGAACTTTTATG
CTGATTATCCCCAGGAAGGAAAGACCGATTTTTTTATCTCCCCCCTCAAT
TCCCAAACATTTCCTTCCCCCCCTGGATTGAAAAACCATACTCCCCATTA
CCTGGGCAATCAAAATCCTAATTCGAGTCTCGTATATAAAACAAAGTTGC
TCTCGGAGACTTAAATTTTGTTAGGGAACACCAAACGCTCCCGGCTTTTT
TTACCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_h03.b1 MSMg01no313_h03.b1 CHROMAT_FILE:
MSMg01no313_h03.b1 PHD_FILE: MSMg01no313_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:08 2005
         (734 letters)



>mm_chr9_30140006_30141137
          Length = 1132

 Score =  644 bits (333), Expect = 0.0
 Identities = 402/445 (90%), Gaps = 32/445 (7%)
 Strand = Plus / Minus

                                                                        
Query: 277  ttaatcttaagtatgaggatattctctgtagtattggtaaacctcatttgatcagatcaa 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 ttaatcttaagtatgaggatattctctgtagtattggtaaacctcatttgatcagatcaa 1073

                                                                        
Query: 337  aagtctcagaacagaggtttccatgaacaggaaattccgtcttaagacaaacattaactc 396
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1072 aagtctcagaacagaggtttccatgaacaggaaattctgtcttaagacaaacattaactc 1013

                                                                        
Query: 397  ctgactaggggttttcaggcctccaaaatcctacagttatgtggcccataaatgtctgct 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ctgactaggggttttcaggcctccaaaatcctacagttatgtggcccataaatgtctgct 953

                                                                        
Query: 457  tttgaatctctttatgccataaattatatttatacacacacacacata------------ 504
            |||||||||||||||||||||||||||||||| ||||||||||||| |            
Sbjct: 952  tttgaatctctttatgccataaattatatttacacacacacacacacacacacacacaca 893

                                                                        
Query: 505  ------------------tctagactatacagttgtaactatatggtactttgtgagggg 546
                              ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 892  cacacacacacacacacatctagactatatagtcgtaactatatggtactttgtgagggg 833

                                                                        
Query: 547  tttatgtttatgttttaattttaaattactggacttatgagatctataaaacaaaaatac 606
            |  |   ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 832  t--aacattatgttttaattttaaattactggacttatgagatctataaaacaaaaatgc 775

                                                                        
Query: 607  ttgtaacctgtatgtacgttccacttgcccaaggacagataacttcctagaatgctgaag 666
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  ttgtaacctgtatgtacattccacttgcccaaggacagataacttcctagaatgctgaag 715

                                     
Query: 667  cctattatgcaaataagataataac 691
            |||||||||||||||| ||||||||
Sbjct: 714  cctattatgcaaataatataataac 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1132
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1122
Effective search space:   812328
Effective search space used:   812328
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)