CGTTCTANNNNNNNCGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCCTGTTGAATGACTCTTAAGTACCGTTAGATGGCTG
TTAGCTACTCCCAATATCTATATGCCCCCACTCACCTCTTAGGGATATCT
TGCTGTGCTGGTCACTACTGTGGGTCACAGGCTTTACATCTGGACAAGAG
AGAGTCTTAAGTTTCCTTACTTAAACTAATATTACCAGACTGTAGAGAAT
GGCCCGGGATAAATTTTCTTTTCTTTTTCCAATCTTCCTATACTCTTCCA
GTTTTAGCTAGATAACGAGTACTCCTTAAGGGCATTTAGATTCTGTATTG
AGGGCAGCTATAAGGTGTTGGAACCCACACTTTTGACTCATAAGACTCAT
TCTGTGTCTGTGTCATGGCCACACTTCCTGAATGGAAGAGTTCCGGTCCA
CCTCAGAGTGTGCGTGCTTCCTCTGCATCGGGCCTTCTAATCCCATCTGC
CTCACGTGTCACTTCTGCCTCATGTGTCACTAGAAGCACTGATGAATCTT
CTGCCACAAAGTGTCTCTGTGAAACCAATGGGAGATTCTTTTAAACATAG
GAGCAAGTATTATTTTATTAAATCAGAGGAACACTTGTATGACCCATTTA
AGAAATAATCTTTTTTTTTAATTATAAAAATAGATCCCTGTGATTAGGTT
GGCCAGCTACTTATTGATTCAGTATAAGGGTAGACCTTGAATGCAAGAGG
TTGCCAGCTTCCGGGAATGGAAATTTTCAACTCAAGTGTATCTGAAGCTC
TGTAATCCATGTCTTGTCCTGAGTGGGGTGGTTTCCTACTTCAGAGGTTC
TCACCCTGTATGGTTGTGACTCCTTGGGAAATTGAACAACCCTTTCTAAA
GGGTTCCTAAGGTCCTTAGAAAACATAAATATTTGTGGTACGATTAAAAC
AGTAACAAATGTCTGTTACGAAATAGTATCAAAAATAATTTTATGGCTGG
GGGTCCCTACAACTCAGGAACTCTATGAAAAGTCCCAGGACCGGAAGGCT
GAAAACCCTGTGCTTAACAGGTTGTCCAATCCACTCTTCTGCCTTAAGTG
AATGTAAATTTTCTTACCCCCCGAAAAAAACACAATCACCTGTCGAATTC
TTCTGGGCTTACATATATTTTTAGAGGCTTCTCTCGTTACACAAATATTC
TATATTTTCTCTTTACTGGTTCACTTTATCTTCTTCCCTCTTTTTCCTCT
TACCTCTATGCTATTTAAATTTATTCTTCTATTG

NAATTTAANNNNNNAACTGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTCAGCAACGTGAA
ACTAAAATGAAATGCAAGCATCTCTTTATTTCAACCCCCTCTTTCCTAAT
CTGCACGAGGCATTTCTTAATTAAATTCACACTTAACAAACTTCAGTGAA
GATCAGAAAATAATTTATGTTATTTTTTCTAAATTTGTGTGCTTGACAAA
GTCTTTTGTAAAGACCACATAAATATGTATTTTTACTGATCGATTCTTCT
AGACTATTATATGACTAAAACATATGTCTCTTATTTTTTAAAAAAGTAGA
AATGTATAAATGCATATTTAATCAATAGATGGCACCAACTCTAAAAAGAG
ATATTACGTTCTACTGGGTCCATTTAAGAATTCTTAAAAAACGCAAATAA
AAATAAAAATGTTTTTTTTCACCCCCCCAGGGGAACTGCTCTCTCCACAA
AAAAAAGGGGGGGGCAATTTTATACCTTCTGTGATTTGTTTTTTTCTTCT
TCTTCTACAGGAAACGGAATCATCAAAACTGTACTTGGATAGCAGCAAAG
TATAAAACTATAAGCCAATTGGAGAGGGGAAGAGTGTGTGAGAAGACAAG
AGTCACTCCTGGAGGTTCTGCCCTTTGAACCAGTAACGTGGTCAGGTAGC
CATGTTCAAGTGCAATGCTGGATCCTAAGAGAGTCATAAGGAAGACAAGT
GTGTGGGGATGGGGCCTTCACCCTTCCACTAATGAATTTCCTCATTTGAC
CTACCTCCTTTTCAACTCACCAACCTTGAACAAGAATACATAGCCTCCTT
TGAATCAGTTGTTTTCCTTTTTTTGCCATTTTTGGCGGGGAAGTTTTTCA
ATCGAGTGACTTCCTAAGGATCCCAGCCTTGCCCTTAACTTACTCTGAAA
ACCAGCCGGGCCTTGAACTCCGGAAGCTCCTTCTCTCACCCCCTTCTTGT
TAAAAAAATGGGAAACCCTTTTGCCCACCCTTTTTTTTATCCAAAGAAAA
CCTTAAGTAAAAATTCGCCTTTTTATGGCTCTGTTCCCATTATATCCATT
TCTTGATAAATGTTTTCCTACAAAACTATACGGCCCCCTCATCATGTCCT
CTAGGCTCGAAACAAAATACTTTTCGAGAATCTTCTCATTCCTCCAACAT
TACACACCTTACCTGATTCTTAAAATATATTCTCAATCCTTCACTTTCTC
CGGATATCATTATTGTCGATGTTTTGTAACAAC

Query= MSMg01no313_i16.b1 MSMg01no313_i16.b1 CHROMAT_FILE:
MSMg01no313_i16.b1 PHD_FILE: MSMg01no313_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:21 2005
         (691 letters)



>mm_chr9_27445020_27446110
          Length = 1091

 Score = 1170 bits (605), Expect = 0.0
 Identities = 650/665 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagatggctgttagctactcccaatatctatatgcccccactcacctcttagggatatc 60
           ||||||||||||||||||| |||| ||| || ||||||||||| | ||||||||||||||
Sbjct: 201 ttagatggctgttagctacccccagtatataaatgcccccacttaactcttagggatatc 260

                                                                       
Query: 61  ttgctgtgctggtcactactgtgggtcacaggctttacatctggacaagagagagtctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctgtgctggtcactactgtgggtcacaggctttacatctggacaagagagagtctta 320

                                                                       
Query: 121 agtttccttacttaaactaatattaccagactgtagagaatggcccgggataaattttct 180
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttaccttactcaaactaatattaccagactgtagagaatggcccgggataaattttct 380

                                                                       
Query: 181 tttctttttccaatcttcctatactcttccagttttagctagataacgagtactccttaa 240
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccttttcccaatcttcctatactcttccagttttagctagataacgagtactccttaa 440

                                                                       
Query: 241 gggcatttagattctgtattgagggcagctataaggtgttggaacccacacttttgactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcatttagattctgtattgagggcagctataaggtgttggaacccacacttttgactc 500

                                                                       
Query: 301 ataagactcattctgtgtctgtgtcatggccacacttcctgaatggaagagttccggtcc 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ataagactcattctgtgtctgtgtcatggctacacttcctgaatggaagagttccggtcc 560

                                                                       
Query: 361 acctcagagtgtgcgtgcttcctctgcatcgggccttctaatcccatctgcctcacgtgt 420
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 acctcagagtgtgcctgcttcctctgcatcaggccttctaatcccatctgcctcacgtgt 620

                                                                       
Query: 421 cacttctgcctcatgtgtcactagaagcactgatgaatcttctgccacaaagtgtctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cacttctgcctcatgtgtcactagaagcactgatgaatcttctgccacaaagtttctctg 680

                                                                       
Query: 481 tgaaaccaatgggagattcttttaaacataggagcaagtattattttattaaatcagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaccaatgggagattcttttaaacataggagcaagtattattttattaaatcagagg 740

                                                                       
Query: 541 aacacttgtatgacccatttaagaaataatctttttttttaattataaaaatagatccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacacttgtatgacccatttaagaaataatctttttttttaattataaaaatagatccct 800

                                                                       
Query: 601 gtgattaggttggccagctacttattgattcagtataagggtagaccttgaatgcaagag 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 gtgattaggttggccagctacttattgattcggtataagggtagaccttgaatgcaagag 860

                
Query: 661 gttgc 665
           |||||
Sbjct: 861 gttgc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no313_i16.g1 MSMg01no313_i16.g1 CHROMAT_FILE:
MSMg01no313_i16.g1 PHD_FILE: MSMg01no313_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:21 2005
         (380 letters)



>mm_chr9_27594128_27594907
          Length = 780

 Score =  694 bits (359), Expect = 0.0
 Identities = 374/379 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtactcagcaacgtgaaactaaaatgaaatgcaagcatctctttatttcaaccccctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 579 agtactcagcaacgtgaaactaaaatgaaatgcaagcatctctttatttcaacaatctct 520

                                                                       
Query: 61  ttcctaatctgcacgaggcatttcttaattaaattcacacttaacaaacttcagtgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 ttcctaatctgcacgaggcatttcttaattaaattcacacttaacaaacatcagtgaaga 460

                                                                       
Query: 121 tcagaaaataatttatgttattttttctaaatttgtgtgcttgacaaagtcttttgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcagaaaataatttatgttattttttctaaatttgtgtgcttgacaaagtcttttgtaaa 400

                                                                       
Query: 181 gaccacataaatatgtatttttactgatcgattcttctagactattatatgactaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaccacataaatatgtatttttactgatcgattcttctagactattatatgactaaaaca 340

                                                                       
Query: 241 tatgtctcttattttttaaaaaagtagaaatgtataaatgcatatttaatcaatagatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatgtctcttattttttaaaaaagtagaaatgtataaatgcatatttaatcaatagatgg 280

                                                                       
Query: 301 caccaactctaaaaagagatattacgttctactgggtccatttaagaattcttaaaaaac 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 279 caccaactctaaaaagagatattacggtctactgggtccatttaagaattcttaaaaaac 220

                              
Query: 361 gcaaataaaaataaaaatg 379
           |||||||||||||||||||
Sbjct: 219 gcaaataaaaataaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)