Query= MSMg01no313_n01.b1 MSMg01no313_n01.b1 CHROMAT_FILE:
MSMg01no313_n01.b1 PHD_FILE: MSMg01no313_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:57 2005
(312 letters)
>mm_chr9_89891121_89891832
Length = 712
Score = 553 bits (286), Expect = e-162
Identities = 307/316 (97%), Gaps = 4/316 (1%)
Strand = Plus / Plus
Query: 1 atgaacacacagaaatgcacac----acagacacagaaagacaaacacagacagacacac 56
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 197 atgaacacacagaaatgcacacacagacagacacagaaagacaaacacagacagacacac 256
Query: 57 acaattttttagagaaacccattgtacaaagagtatgtgggccctgactttcccatgatt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaattttttagagaaacccattgtacaaagagtatgtgggccctgactttcccatgatt 316
Query: 117 atgggactaatgtttatttcaaatcagaaacaagggatgagataaagcaggacttgcctt 176
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 317 atggaactaatgtttatttcaaatcagaagcaagggatgagataaagcaggacttgcctt 376
Query: 177 ggcaaatcagacagttggctactcaagacatctcatgacaaacggaaatgccttactact 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 ggcaaatcagacagttggctactcaagacatctcatgacaaacagaaatgccttactact 436
Query: 237 cagtgtggtccatagctcaggtgcgtgttcatccctagaatctgttagaaatgcagacat 296
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagtgtggtccatagctcaggcgtgtgttcatccctagaatctgttagaaatgcagacat 496
Query: 297 ttgggatggaaatgta 312
||||||||||||||||
Sbjct: 497 ttgggatggaaatgta 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_n01.g1 MSMg01no313_n01.g1 CHROMAT_FILE:
MSMg01no313_n01.g1 PHD_FILE: MSMg01no313_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:57 2005
(429 letters)
>mm_chr9_89936477_89937305
Length = 829
Score = 764 bits (395), Expect = 0.0
Identities = 421/430 (97%), Gaps = 2/430 (0%)
Strand = Plus / Minus
Query: 1 aatcccaggcagcctcaggaggacatttgagtgcagccaatggcagcttcttgactctaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629 aatcccaggcagcctcaggagggcatttgagtgcagccaatggcagcttcttgactctaa 570
Query: 61 ggccaagctgcctgtagaatgcctcctggtggctagtctccactcattttttttt-ctca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 569 ggccaagctgcctgtagaatgcctcctggtggctagtctccactcatttttttttcctca 510
Query: 120 aggcaaatttgctgcctccctgtccccccaactttttctcacctcagaatgttaccctac 179
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 509 aggcaaatttgctgcctccctgt-cccccaactttttctcacctcagactgttaccctac 451
Query: 180 agtcttccagagttaacgtcttcgcagtagcctgggtggggagcagattcaactctgggc 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtcttccagagttaacgtcttcacagtagcctgggtggggagcagattcaactctgggc 391
Query: 240 tcaactcacggtgtctcactatgacaacagtgactgtaggaacaagatggtggccactgg 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 390 tcaactcacggtgtctcgctatgacaacagtgactgtaggaacaagatggtggtcactgg 331
Query: 300 tcaagtggaatttgtcgtttgatgattgtaaaaaccctgccaggtttctttcaataattt 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcaagtggaatttgtcgtttggtgattgtaaaaaccctgccaggtttctttcaataattt 271
Query: 360 tatttttcaaagttaaagatatgcatattattgtgtgtggntgtgtttgtgtgttgtgtg 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 270 tatttttcaaagttaaagatatgcatattattgtgtgtgggtgtgtttgtgtgttgtgtg 211
Query: 420 catatgcgtg 429
||||||||||
Sbjct: 210 catatgcgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
