BAC Information

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BAC

Clone NameMSMg01-315G22
Chromosome9 (Build37)
Map Location 27,123,965 - 27,124,306
singlet/doubletsinglet
Overlap geneIgsf9b
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneSpata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315G22.T7 (MSMg01no315_g22.b1)MSMg01-315G22.TJ (MSMg01no315_g22.g1)
ACCAG436080AG436081
length719732
length of high quality
(start - end)		373 (51 - 423)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no315_g22.b1 PHD_FILE: MSMg01no315_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:53 2005CHROMAT_FILE: MSMg01no315_g22.g1 PHD_FILE: MSMg01no315_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACAGGCTTCCACCTTCTTAATTCTCCCCTGATTACATGA
GCGGTTATCCTCTCCCAAGCACTGAAGGTGTGATTAACATTCTATCCTGT
TTGGAAAATCAGCTTGAAAGAACTTTTAGAAATGCTTTCATTCAATCACC
CATAGAAGGAGTTACAGAGACAAAGTTTAGAGCTGAGACAAAAGGATGGA
CCATCTAGAGACTGCCATATCCAGAAATCCATCCCATAATTAGCCTCCAA
ACGATGACACCATTGCATACACTAGCAAGTGTTTGCTGCAAGGACTCTGA
TATAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTG
GATGCTCACAGTCAGCTATTGCACCCCCCCACAGGGCTCCCAATGGAGGA
GCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCAGTAGGTAC
AACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATAT
GTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGG
ACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAA
ATGGGAATGGGTGGGTAGGGAAGTGGGTGTTAGTNNATATTGTCTATTTC
TTCCTTTTCTTTTCTTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAGCATAGTCAACTA
ACCTGGACCTCCGGGGGCTCCCAGAGACTGCACCACCAACCAAAGAGCTA
GCGTGGTCTGGACCTAGTCCACCCCCCAGACCCCCGACACACATACACAC
ATATGTAGCAAATGTGTAGCTTGGTCTTCATGCTAGTCTCCCAACAAGTG
GATCAGAGGCTGTCCCTGAATTGGTTACATGTCTTTGGATCTTTTCGCCT
AACTGGGCTGCTTTGTCTGGTCTCAGTGGGAGAGGATGCACCTAGTCCTG
CAGATACCTGATGTACTAGGGTGAAGTGATACCCCAGGGGGTGGGGGAAG
TTCTCCCTTCTCAGAGCCCCCCCCCCACGAGGGAATTGGGGAGAATGTGG
GAGGNANCCCTGNANATAGAGTTGCCCTGATATCACGATGTAAAGTGAAC
AAATTAATTATTGGAATAATTTACCATCACGACTTATCACACTCCCAACT
ACGCAATATGATTCCTATATCCTATCCATTTATTTATGGTCGTATCGTGG
CTCCTATCTAACTGTTTCTTTTTCTCCCTACCCTTCTTTGCTGACTTTTT
CTCCCTGCGTAGATCTCTTGGATTTTATTGACCTTTTTCCCCTCCTTCTC
CTCTTCTACTGCTACGCTCCTTCGTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_g22.b1 MSMg01no315_g22.b1 CHROMAT_FILE:
MSMg01no315_g22.b1 PHD_FILE: MSMg01no315_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:53 2005
         (373 letters)



>mm_chr9_27123965_27124737
          Length = 773

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacaggcttccaccttcttaattctcccctgattacatgagcggttatcctctc 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 342 gaattctacaggcttctaccttcttaattctcccctgattacatgagcggttatcctccc 283

                                                                       
Query: 65  ccaagcactgaaggtgtgattaacattctatcctgtttggaaaatcagcttgaaagaact 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 282 ccaagcactgaaggtgtgattaacattctatcctgtttggataatcagcttgaaagaact 223

                                                                       
Query: 125 tttagaaatgctttcattcaatcacccatagaaggagttacagagacaaagtttagagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttagaaatgctttcattcaatcacccatagaaggagttacagagacaaagtttagagct 163

                                                                       
Query: 185 gagacaaaaggatggaccatctagagactgccatatccagaaatccatcccataattagc 244
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 162 gagacaaaaggatggaccatctagagactgccatatccagggatccatcccataattagc 103

                                                                       
Query: 245 ctccaaacgatgacaccattgcatacactagcaagtgtttgctgcaaggactctgatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctccaaacgatgacaccattgcatacactagcaagtgtttgctgcaaggactctgatata 43

                                                     
Query: 305 gctgtctcttgtgagactatgccggggcccagcaaacacaga 346
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gctgtctcttgtgagactatgccggggcccagcaaacacaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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