BAC Information

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BAC

Clone NameMSMg01-318D09
Chromosome9 (Build37)
Map Location 100,911,584 - 100,911,877
singlet/doubletsinglet
Overlap genePccb
Upstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990
Downstream geneLOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318D09.T7 (MSMg01no318_d09.b1)MSMg01-318D09.TJ (MSMg01no318_d09.g1)
ACCAG438071AG438072
length1,024767
length of high quality
(start - end)
---293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no318_d09.b1 PHD_FILE: MSMg01no318_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:21 2005CHROMAT_FILE: MSMg01no318_d09.g1 PHD_FILE: MSMg01no318_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATANTTTCCCGACCTA
CGNCGNNAATTCTAAATGTGCATATTTTCGAATATACACCNNTTCATGAA
CCACAAACACATTCCACCAACACTGGGNAATTTTAATGGTTTATACACCG
CCACAATTAAATAANAAAAACTTTTTGGNNCTCCATTAATAATCCTTATA
TATANTATNTNNGTACATAATTTTCCTCCNNTTGACCAAAACATCCCTTT
TTATAANNCATGTGATTTGGTATTGAGGTTTTTTATTTGGGCTACNGCCC
TTTTAAAAANTNNNANNAAAANTATATGTCAAAANNNNCNNNACAACCNN
NAATTATGATTTTCAAAAATNGTTTTAATATCTCTTTCTCANGCTTTTTT
GNCTAATATCAATTTCCAAAANTNTTTTTTTTTTTTTTTTNCCTCGCCTT
ACCCCCCGCCCTTTTGGCGGGAATCTTTTAAGTGGTGGGTTCCCCCACCC
CCCCCCCAAAAAAAATTNNTTCTAAAAAATAAAATTTGTCCCCCTCCAAT
TTTCTATTTTTTCNCAATATCCTCCCTTAACACTTTCCTCCCATCNNNCC
CCTCNTTATTTAAACCTTTTATCTTTTTTCAAAAACTATTTTNNTTNTTT
TCTTTGAAAAAATTCTCTTTCTCNCNTTCCNNNCCTTTCCTCCCNTTTTA
TCCTACAAAGAACCTGATTTAAACCTAGCTCTATGTCTTTTTTTCTCTTT
TTCCCNCNTTTTACNNNNCNGGCCTNNTTTTTTTCTCCTTATCCTTTCTT
TCTTTTNATTTATTCTACTATTTATAAACAAAAATAATAAAGACAAAAGT
CNNNTGACTNTTGTGTTTNTCTTTTTTGTNCTNTAATTTTCGCTANTNNN
NNCATATAAGTTATTTTTTACCNTTTTCCTTTTTTTTTTTTCCCCCATTA
CATTATCAAATAATAGAGAAACAGTACTAATNCTCACTTTNNCTTTTTNC
CTTTCTTGTCTAAAAAACCATGTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCAAATTCCAGAGCCTATAAGGTCAAGAGTCTCCCA
CCTGAGGCCACTGAGCTTTGACACCGACCACGGTCACCGGCTGAGGAATT
CCCAGTTCCTCCTCAGTCTGCTCCAAGGCTGCAATGCCAGCTGCCAAATG
CTAAGGAATACCAACTTCTTTAGCCCGCGTAGGAGCTGAGCGCTTGTGGA
GCTAAGAGCCCTGTTACCTGAAGCCTGCATCAGAGCTGTAGCAGTGGGGT
ACCACCTGTGACTGCTTCTACCTTCCTTCTGTTGCAGCTTGCTTCTGTCA
CATGCCGAGGGACACAGTATTCTGCAAAGCAACAGCCCTTGAGCAGTTTT
CTTCTGGCCTGCCATGACCACCCCCCCCCCAGAACGAAAGGACCTCAGCC
AGCTGGTTGGGTGACACAGTCACCCTTGTCAGAGATCATCTGACTGGATG
ATCCTTTGCCTGCTCTCCCTCACTGGTGTATACGGTTTTGGTTACCATTA
AGTTAGAATAAATTTTGAAATCAAAAAGTGTGGGCCAGGTGTTGTGACGC
ACACATTAAATTCCATTGCTTGTGAATCAGAGGTAGGCAGATCTCTGAGG
TCAACCCTGGTCTACAGATCAAATTCCAGGACAACCAGTGCCATACAGGC
ATACCCTGTCTTGACCATATCATATTATTATAATAATCATTACATTAATA
ATATCTTTATTAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_d09.g1 MSMg01no318_d09.g1 CHROMAT_FILE:
MSMg01no318_d09.g1 PHD_FILE: MSMg01no318_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:21 2005
         (293 letters)



>mm_chr9_100911384_100912077
          Length = 694

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcct-ataaggtcaagagtctcccacctgaggccactgagctttgacaccgaccacg 59
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 494 agagcctaataaggtcaagagtctcccacctgaggccactgagctttgacactgaccacg 435

                                                                       
Query: 60  gtcaccggctgaggaattcccagttcctcctcagtctgctccaaggctgcaatgccagct 119
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 434 gtcaccagctgaggaattcccagttcctcctcagtctgctccgaggctgcaatgccagct 375

                                                                       
Query: 120 gccaaatgctaaggaataccaacttctttagcccgcgtaggagctgagcgcttgtggagc 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 374 gccaaatgctaaggaataccaacttctttagcccgcgtaggaactgagcgcttgtggagc 315

                                                                       
Query: 180 taagagccctgttacctgaagcctgcatcagagctgtagcagtggggtaccacctgtgac 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 314 taagagccctgttacctgaagcctgcgtcagagctgtagcagtggggtaccacctgtgac 255

                                                                 
Query: 240 tgcttctaccttccttctgttgcagcttgcttctgtcacatgccgagggacaca 293
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 tgcttctaccttccttctgttgcagcttgcttctgtcacatgccaagggacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)