Query= MSMg01no318_p08.b1 MSMg01no318_p08.b1 CHROMAT_FILE:
MSMg01no318_p08.b1 PHD_FILE: MSMg01no318_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:13 2005
(349 letters)
>mm_chr9_24190972_24191720
Length = 749
Score = 671 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Minus
Query: 1 acattttgatccttcagtcttgcttttcagatatacttttagataggtccagggtggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acattttgatccttcagtcttgcttttcagatatacttttagataggtccagggtggtac 368
Query: 61 tctcaagtattctgtgtgtgcaatcccactaacagacacaggcactggccacatctctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctcaagtattctgtgtgtgcaatcccactaacagacacaggcactggccacatctctgc 308
Query: 121 ggacactgctctctaagtcccccagatgccctccgactttctctgggttttcacctcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggacactgctctctaagtcccccagatgccctccgactttctctgggttttcacctcctt 248
Query: 181 gtgttccgttgagtatctgagacaaagcttcttctgatgaccatggtgttctttcccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtgttccgttgagtatctgagacaaagcttcttctgatgaccatggtgttctttcccttt 188
Query: 241 aggtgttctgtcctgcaagctcaatttctctttatttcccagattctcagctatattccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aggtgttctgtcctgcaagctcaatttctctttatttcccagattctcagctatattccc 128
Query: 301 ccacttcaaaagtttaatcaggctctgtctaggatttctgttcatgc 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ccacttcaaaagtttaatcaggctctgtctaggatttctgttcatgc 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_p08.g1 MSMg01no318_p08.g1 CHROMAT_FILE:
MSMg01no318_p08.g1 PHD_FILE: MSMg01no318_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:13 2005
(635 letters)
>mm_chr9_24146384_24147418
Length = 1035
Score = 1102 bits (570), Expect = 0.0
Identities = 624/652 (95%), Gaps = 17/652 (2%)
Strand = Plus / Plus
Query: 1 ttccatgctggtagaaagtgactttactttctcttttgtcactaaaggggaagcaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccatgctggtagaaagtgactttactttctcttttgtcactaaaggggaagcaaaatc 260
Query: 61 tagtctctattgtcacatttctacctgggaaggagactgatttcttttcctctgggatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtctctattgtcacatttctacctgggaaggagactgatttcttttcctctgggatgc 320
Query: 121 tgaagtagggatgagactcttccatgcaaaataaccatggttctgagtagaagagcctat 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgaagtagggatgagactcttccatgcaaaataaccatggttttgagtagaagagcctat 380
Query: 181 aaggtctctgctatagctcaggacccagaaccatgacaattaagaataattcgtgcccgt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aaggtttctgctatagctcaggacccagaaccatgacaattaagaataattcgtgcctgt 440
Query: 241 aagtaaaggagctcttactctgacagcgctgtaatagcaagaggcttttgtgtactactc 300
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aagtaaaggaactcttactctgacagcgctgtaatggcaagaggcttttgtgtactactc 500
Query: 301 ccaaagcagagtaaatggaggagaaccaagtaagaaaacatgttcataccccacccagtg 360
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 501 ccaaagcagagtaaatggaggagaaccaagtaagaaaacatattcataagccacccagtg 560
Query: 361 ggaatgatgacaaaatattaggtgacaagactaggagatgtgaaccccatttaagacaac 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgatgacaaaatattaggtgacaagactaggagatgtgaaccccatttaagacaac 620
Query: 421 acaaacaatcttgagggggagaaatgaaagaaaaagattggtagctacag-----cc--- 472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 acaaacaatcttgagggggagaaatgaaagaaaaagattggtagctacagactctccaag 680
Query: 473 ---------tccatgtcttcaataacaatcttgggtgaagtgaagaaagctctgttggta 523
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 cacatcgtctccatgtcttcaataacaatcttgggtgaagtgaagaaagctcagttggta 740
Query: 524 aaatgcttgccatccctaggcaaacatgaggagctgagtttaacccccagcacccacgtt 583
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatgcttgccatccccaggcaaacatgaggagctgagtttaacccccagcacccacgtt 800
Query: 584 aaaaaccagatatgtggatccctagaactcattgaccaaccatccaatctaa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaaccagatatgtggatccctagaactcattgaccaaccatccaatctaa 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
