Query= MSMg01no319_a22.b1 MSMg01no319_a22.b1 CHROMAT_FILE:
MSMg01no319_a22.b1 PHD_FILE: MSMg01no319_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:20 2005
(298 letters)
>mm_chr9_94355284_94355982
Length = 699
Score = 511 bits (264), Expect = e-149
Identities = 290/300 (96%), Gaps = 4/300 (1%)
Strand = Plus / Minus
Query: 3 aaaataa---aaaaaccacctaggacttttagtgagatggtcaactagc-tttttttttt 58
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 425 aaaataaaataaaaaccacctaggacttttggtgagatggtcaactagcttttttttttt 366
Query: 59 ttcccttcactgtgatgcagagtgcagagggcatggtaagaatcctaggatggacaggga 118
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 tttccttcactgtgatgcagagtgcacagggcatggtaagaatcctaggatggacaggga 306
Query: 119 gtgatgaaagagcaagccaggcagagcatgaaaggcagggaagttggggcagttcactgc 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gtgatgaaagagcaagccaggcagagcatgaaaggcaggcaagttggggcagttcactgc 246
Query: 179 agtgtgggcaggggtagcaaatggatggaagctgtattacttttctattactatgataaa 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtgtgggcaggggtagcgaatggatggaagctgtattacttttctattactatgataaa 186
Query: 239 atactatggccaagacaagttctaggaaaaagactttatttgggcttaagggatctgagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 185 atactatggccaagacaagttctaggaaaaagactttatttgggcttaagggatccgagt 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 699
Length adjustment: 9
Effective length of query: 289
Effective length of database: 690
Effective search space: 199410
Effective search space used: 199410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_a22.g1 MSMg01no319_a22.g1 CHROMAT_FILE:
MSMg01no319_a22.g1 PHD_FILE: MSMg01no319_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:20 2005
(629 letters)
>mm_chr9_94191369_94192397
Length = 1029
Score = 1151 bits (595), Expect = 0.0
Identities = 620/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 1 tttttgttgttggaggtgaaaaagaagggaaggtggagaaggtttagccgagaagtggag 60
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttttgttgttggaggtgaagaagaagggaaggtggagaaggtttagcagagaagtggag 260
Query: 61 agaagagaggagatattaagccatacacagggttttgtgtaatcttttataatcttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagagaggagatattaagccatacacagggttttgtgtaatcttttataatcttcttt 320
Query: 121 gattgttaaatattcaatgttttcctaggaaaacataactatatctaagatctgcatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgttaaatattcaatgttttcctaggaaaacataactatatctaagatctgcatttt 380
Query: 181 atttggcagaattcacattacaatatatttaaagattagttagtttgttagttagttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttggcagaattcacattacaatatatttaaagattagttagtttgttagttagttagc 440
Query: 241 ttttcattagtagatacagtaagacaaaagtatatcaatattgaaaacgaagaaacaaaa 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcattagtagatacagtaagacgaaagtatatcaatattgaaaacgaagaaacaaaa 500
Query: 301 gttagcagtggttgcctttctatactctataagagatagctttttttccaccatctggaa 360
|||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct: 501 gttagcagtggttgcctttctatactctataagagacagcttttttt--aacatctggaa 558
Query: 361 ttctctttagatatgaaattacatggaaagagaacggtcaaaggtaaggtcaaagaaact 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 ttctctttagatatgaaattacatggaaagagaacggccaaaggtaaggtcaaagaaact 618
Query: 421 gatttccctgggctgccctgcatgtagtgggaacatggtaaccttggcatgagtgtgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatttccctgggctgccctgcatgtagtgggaacatggtaaccttggcatgagtgtgcca 678
Query: 481 ggctctatgaaggatgtaccagtgagaagtcccggggtaagggaaagactgattacattc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggctctatgaaggatgtgccagtgagaagtcccggggtaagggaaagactgattacattc 738
Query: 541 taaagtgctgaaatttgaaattcatcacagagcctttattatcagccccaacccaactac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taaagtgctgaaatttgaaattcatcacagagcctttattatcagccccaacccaactac 798
Query: 601 cttgttaccattcttatacttaactgtct 629
|||||||||||||||||||||||||||||
Sbjct: 799 cttgttaccattcttatacttaactgtct 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
