BAC Information

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BAC

Clone NameMSMg01-319F16
Chromosome9 (Build37)
Map Location 123,146,452 - 123,146,790
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1
Downstream geneTmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319F16.T7 (MSMg01no319_f16.b1)MSMg01-319F16.TJ (MSMg01no319_f16.g1)
ACCAG438900
length719717
length of high quality
(start - end)
---345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no319_f16.b1 PHD_FILE: MSMg01no319_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:40 2005CHROMAT_FILE: MSMg01no319_f16.g1 PHD_FILE: MSMg01no319_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTTGGTTTCCTATTCCACACGAGAGCTAATGGCGCCTTTCCCCTAG
AGGAATCCTAGTTTGCCATCCCCAATAACCAGTCGTCGCTCCCTTGTTCC
GATTTGACCGCCGGAAGGCTTACAGGAAGCACAAGGXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXX
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGGCAGCCACATGGAGCTGTGTGTC
TCTACCCAGCATCCTTAGAAACTGGGTCTCTAGAAGGGGAAAGCAGGAAT
CTGCATGTCCCCTTGTGTTCCCATGGACCTTTGAATGCCCTAGAATCAGG
GAATTGGTTTAGATTTCCCCCACACTTGAGAACTACATTCCAAGTCAGAG
CCTACAAAAAGTAACTTCTCTTTCCCTTCCTGGTGTGAGTCTGAGTAGCC
AAGGAGGAGGTCTCTTCTAGTGTCATGCCAACCCCATGACACTCAGTGTT
TGCAAGTTGGGTATGCCCATACCCTACTCTCAACTCCTCATGTCCGTCCA
TGACCCTGAAGACCCCCCCCCCCTCTAAAGATGAGACAAACAAAGATATA
ATCAGGAAAAAGGTATGGGTGTCATCAAGCCAAGCCAAGAAGGAGCAAGG
TCCTAAGTATGACTCTGACCCATCCAGGGTTACTAGATTTAACAAACGTG
CAGCCCAGATGCCCACATAAAAATGAGCCTCAGATATGCAATGGCTTTTA
TGCGCACACACAGTTTGGGACATATGTAATTACTGCAAAGATTTTAAAGT
CTGTCTGCTGTGTGGTAGCCCTGACTTCAAAAGTAGGCAAGACAGTGCTG
ACCAGAAAGCTCATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_f16.g1 MSMg01no319_f16.g1 CHROMAT_FILE:
MSMg01no319_f16.g1 PHD_FILE: MSMg01no319_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:41 2005
         (345 letters)



>mm_chr9_123146252_123146993
          Length = 742

 Score =  600 bits (310), Expect = e-176
 Identities = 333/342 (97%), Gaps = 3/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggcagccacatggagctgtgtgtctctacccagcatccttagaaactgggtctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttcaggcagccacatggagctgtgtgtctctacccagcatccttagaaactgggtctcta 480

                                                                       
Query: 61  gaaggggaaagcaggaatctgcatgtccccttgtgttcccatggacctttgaatgcccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaaggggaaagcaggaatctgcatgtccccttgtgttcccatggacctttgaatgcccta 420

                                                                       
Query: 121 gaatcagggaattggtttagatttcccccacacttgagaactacattccaagtcagagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaatcagggaattggtttagatttcccccacacttgagaactacattccaagtcagagcc 360

                                                                       
Query: 181 tacaaaaagtaacttctctttcccttcctggtgtgagtctgagtagccaaggaggaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 359 tacaaaaagtaacttctctttcccttcctggtgtgagtctgagcagccaaggaggaggcc 300

                                                                       
Query: 241 tcttctagtgtcatgccaaccccatgacactcagtgtttgcaagttgggtatgcccatac 300
           ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 299 tctcctagggtcatgccaaccccatgacactcagtgtttgcaagttgggcatgcccatac 240

                                                     
Query: 301 cctactctcaactcctcatgtccgtccatgaccctgaagacc 342
           ||||||||||||||   ||||| |||||||||||||||||||
Sbjct: 239 cctactctcaactc---atgtctgtccatgaccctgaagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 742
Length adjustment: 9
Effective length of query: 336
Effective length of database: 733
Effective search space:   246288
Effective search space used:   246288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)