BAC Information

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BAC

Clone NameMSMg01-320A17
Chromosome9 (Build37)
Map Location 83,018,783 - 83,192,956
singlet/doubletdoublet
Overlap geneHmgn3
Upstream geneLOC100039085, Irak1bp1, Phip, LOC100039144
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320A17.T7 (MSMg01no320_a17.b1)MSMg01-320A17.TJ (MSMg01no320_a17.g1)
ACCAG439391AG439392
length715707
length of high quality
(start - end)
589 (127 - 715)594 (74 - 667)
definitionCHROMAT_FILE: MSMg01no320_a17.b1 PHD_FILE: MSMg01no320_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005CHROMAT_FILE: MSMg01no320_a17.g1 PHD_FILE: MSMg01no320_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,192,412 - 83,192,956)(83,018,783 - 83,019,376)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGACAATCTACATAAAATACTAACATCCAAATTCATGGTAAGGA
GCACTAATGATAATTCAAAACCCCCATTTTGGCAACAAGAAACTTGCCTA
GCTTTTCTGTGGCACAGAAAACCTGGCTCAGCATATGCCCTGAAGGCATT
CTGCTGGTATTGCAGAAGGATGTGAATTCAGAACATAAACATAAACTGCA
GTGACACCCAGGCTCAGAAGCAGACATGTCCTCTAAGTCCAGCCCAAGGC
TCTTCAAGCTCAGGGAAAGTGGGTCTAATATTGACCCCAGACGAACCTCC
ATGTTCATGGGTAGATGCCCCAAAGCATTTAGAGTTGGCCCCCACCCTAG
GTACTGGCCAACAGCAGAGCTGTGAAGAGCTCTGATTAACCTCTGTCGTT
CATAGGTAGAGAGTGAGACATTGAATTAGATTCCTAAGCCACAGCAACAA
AATGCCACATACCCAATAACCTAAAACATATCAATGGGTTATCCTACGCT
CTGGGAGTCAGAAGTCAAACAAAGGTTTTTCAGAGCTAAAATAAATCAAG
GTTCAGGCTTAGTTGCCATCCTTATTCCAGAAGAGAACCCATTCCTTTGC
CTCTTCCACCTTCTAGAAGCCTATCGTCATGTGTCCTTTCTATGTCTTCT
CAGATAACCTTGATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAGCAATTAGGTTCTTGCTTCATTG
CCAGGCTTCTATGAATCAGGTCAGGACCAAGAGCACTCAGGAGTATGAGA
ATCATGGGCAAATAAAGGTCTTGTGCATTTCCACGAGGCCCCTCAGCTCC
CAGTTGCCCTAGTACTAGCAAGGAAGGTTGACGATTTGCAGGATGGTTAG
GAGGTGGGCACAACAGAGGGTTTGGTACGTCGAGGCACCAGTGAGAGTTT
AGCTTGTGTTAAATCAGAGACAGGGGGATCACTAGCTTCCCAATGACTGG
ATCAGGACACAGGCTTATGCGGAAGCACTGAAGCGAGACACTTTGCTGTG
TGGCTGGAGCTGAACGGCATCACCCTCTCCAAAGTGAGCCGAGCAGGAAT
CGGATGGGCACCAGCATTCGACTCAGCTGTCCTAATCCCAGACATTTGTT
CCATGCCCTAAGAAGTTCTAAGGGAGCTAAGAAGCAAATGGCACAGGGGG
TTCACTAGAACATTAGCCTTACAGTGGGAGGGATGACTTCTTAACTGAAG
ACAGGCTTCCTCCATGCTGATGTGCTACACCCAGATAAATTACTGTATCC
GTTTACTACTGTTAGAGCCCAGGGTAACAATTTGTCAGGACAGCAATGGT
GTGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_a17.b1 MSMg01no320_a17.b1 CHROMAT_FILE:
MSMg01no320_a17.b1 PHD_FILE: MSMg01no320_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:28 2005
         (589 letters)



>mm_chr9_83192412_83193400
          Length = 989

 Score = 1023 bits (529), Expect = 0.0
 Identities = 541/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggcaacaagaaacttgcctagcttttctgtggcacagaaaacctggctcagcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 545 ttttggcaacaagaaacttgcctagcttttctgtggcacagaaaacctggcgcagcatgt 486

                                                                       
Query: 61  gccctgaaggcattctgctggtattgcagaaggatgtgaattcagaacataaacataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gccctgaaggcattctgctggtattgcagaaggatgtgaattcagaacataaacataaac 426

                                                                       
Query: 121 tgcagtgacacccaggctcagaagcagacatgtcctctaagtccagcccaaggctcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgcagtgacacccaggctcagaagcagacatgtcctctaagtccagcccaaggctcttca 366

                                                                       
Query: 181 agctcagggaaagtgggtctaatattgaccccagacgaacctccatgttcatgggtagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agctcagggaaagtgggtctaatattgaccccagacgaacctccatgttcatgggtagat 306

                                                                       
Query: 241 gccccaaagcatttagagttggcccccaccctaggtactggccaacagcagagctgtgaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 305 gccccaaagcatttagagttggcccccaccctaggtactggccaccagcagagctgtgaa 246

                                                                       
Query: 301 gagctctgattaacctctgtcgttcataggtagagagtgagacattgaattagattccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagctctgattaacctctgtcgttcataggtagagagtgagacattgaattagattccta 186

                                                                       
Query: 361 agccacagcaacaaaatgccacatacccaataacctaaaacatatcaatgggttatccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agccacagcaacaaaatgccacatacccaataacctaaaacatatcaatgggttatccta 126

                                                                       
Query: 421 cgctctgggagtcagaagtcaaacaaaggtttttcagagctaaaataaatcaaggttcag 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cgctctgggagtcagaagtcagacaaaggtttttcagagctaaaataaatcaaggttcag 66

                                                                       
Query: 481 gcttagttgccatccttattccagaagagaacccattcctttgcctcttccaccttctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcttagttgccatccttattccagaagagaacccattcctttgcctcttccaccttctag 6

                
Query: 541 aagcc 545
           |||||
Sbjct: 5   aagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no320_a17.g1 MSMg01no320_a17.g1 CHROMAT_FILE:
MSMg01no320_a17.g1 PHD_FILE: MSMg01no320_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:28 2005
         (594 letters)



>mm_chr9_83018583_83019576
          Length = 994

 Score = 1064 bits (550), Expect = 0.0
 Identities = 583/594 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagcaattaggttcttgcttcattgccaggcttctatgaatcaggtcaggaccaagag 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 201 caaagcaattaggttcttgcttcattgccaggcttctatgaatctggtgaggaccaagag 260

                                                                       
Query: 61  cactcaggagtatgagaatcatgggcaaataaaggtcttgtgcatttccacgaggcccct 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cactcaggagtatgagaatcatgggcaaacaaaggtcttgtgcatttccacgaggcccct 320

                                                                       
Query: 121 cagctcccagttgccctagtactagcaaggaaggttgacgatttgcaggatggttaggag 180
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctcctaggtgccctagtactagcaaggaaggttgacgatttgcaggatggttaggag 380

                                                                       
Query: 181 gtgggcacaacagagggtttggtacgtcgaggcaccagtgagagtttagcttgtgttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggcacaacagagggtttggtacgtcgaggcaccagtgagagtttagcttgtgttaaa 440

                                                                       
Query: 241 tcagagacagggggatcactagcttcccaatgactggatcaggacacaggcttatgcgga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 441 tcagagacagggggatcactagcttcccaatgactggatcaggacacaggcttaggcaga 500

                                                                       
Query: 301 agcactgaagcgagacactttgctgtgtggctggagctgaacggcatcaccctctccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 agcactgaagcgagacactttgctgtgtggctggagctgaacggcgtcaccctctccaaa 560

                                                                       
Query: 361 gtgagccgagcaggaatcggatgggcaccagcattcgactcagctgtcctaatcccagac 420
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ctgagccgagcaggaatcggatgggcaccagcatgcgactcagctgtcctaatcccagac 620

                                                                       
Query: 421 atttgttccatgccctaagaagttctaagggagctaagaagcaaatggcacagggggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgttccatgccctaagaagttctaagggagctaagaagcaaatggcacagggggttc 680

                                                                       
Query: 481 actagaacattagccttacagtgggagggatgacttcttaactgaagacaggcttcctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actagaacattagccttacagtgggagggatgacttcttaactgaagacaggcttcctcc 740

                                                                 
Query: 541 atgctgatgtgctacacccagataaattactgtatccgtttactactgttagag 594
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 atgctgatgtgctacacccagataaattactgtatccgtttgctactgttagag 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)