BAC Information

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BAC

Clone NameMSMg01-320D08
Chromosome9 (Build37)
Map Location 87,508,309 - 87,508,650
singlet/doubletsinglet
Overlap genenone
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D08.T7 (MSMg01no320_d08.b1)MSMg01-320D08.TJ (MSMg01no320_d08.g1)
ACCAG439506AG439507
length739761
length of high quality
(start - end)
342 (377 - 718)142 (126 - 267)
definitionCHROMAT_FILE: MSMg01no320_d08.b1 PHD_FILE: MSMg01no320_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:40 2005CHROMAT_FILE: MSMg01no320_d08.g1 PHD_FILE: MSMg01no320_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTGCATTCTATCTATCTCAATAGACAAGTGGAGTCAGAGTCCT
AAGAGCTGACAGCTTTTTCTCTCAGATACATTCCAGCCTGCTCCAAACAG
ATTCAGCATTCATGAAACCAGAGAACTAGCAGAGGGCTCTGAGACTGCCT
TGTCCAGTGGTTCCCACACGGTCCATCAGCCAAGATTCCTTTAACACCTC
CTTTGTATCTCATCCATAAGCCATGAATTGGGATTTTTTTTCAACTGAAT
TGAATGTGTTAAATATAATGAACTATACTTGCTAGTGTTTTTCATCAACA
ACAAATATATGTATGTAGTCTAAGCATGATCCTTATCCCACATGGACTTG
AAAATAATTTTCAATTCTAAGCTAGAAAATTTGGAATTATTCATTATAAT
CTTATTTAAAAAAGTTTTGGAATTGCTTTTAGAACCTCAATATTGTTTCA
TAAGTCTGTGTAACTCCAATTCAAGAAAACTCAGTAAGAGAATATTTGCT
CAAAGTTGAGATCAATTATTCACTCAAGTCTTGATAACAGGACCAATTCT
ATACCAGAGAGTGAGAGCAGGCGTATTTAACAAATGTTCAGGAGTTAAAG
AGTTAGATTTAACAAGTCTCGTATGACACTGTGAAGAGGAATGAAGGCCC
AGAAGTATGAGAAAGCCTGGACTTGGCTATGAACTTTCT
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGTCTGTCTCTTTTCACTCTGA
TAGAAGACGCCAGGATTGTATTCCGTCCCAAGGGACTTCTGGGTGATGAT
GGAGGAAAACTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTCTGTCTGTCTGTCTG
TCTGTCTGTTTTGGTCAAGGTAAGATCCATATTTTGTGAGAAATCTCTAG
TGTATAGAGGTTAACATGTTTTTTTTTTGATTGCCTTTGCTTTGACTTAA
AACCACCTGTTANAGTAGCTTCCNAAGGCGNANCCCCNAGAGGAGGGAAG
AAATAGTANGGNGCNNCCNNNAAAAAAAGGATTAAAAAAAATTTGTTGGG
GGGGGGGTNTGTATTTATTAATCTAATGAACCTGAATCTCATAGGATGAA
AGTTTTATGGTTGTGATAACTCTCAAGATTATGATATAGTGTCTCTTCTC
ACGTCCTTATATAGTGATATAAATATTTTTTTACATCCATGTGTCCGCTG
TTCTCCCTGTTTTCCCCCCCACATTGTTGCATGAAAACAATTGGAATTAC
GGATGTTTTTTTTTTATTTTTTCCCCTTTTTTCGCCTCTTATGTAATTTG
TGTTTCTTTTCCTGCGCTATATCCCCTCTTAGTTGATTGTCCAGATTTAA
CCACTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d08.b1 MSMg01no320_d08.b1 CHROMAT_FILE:
MSMg01no320_d08.b1 PHD_FILE: MSMg01no320_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:40 2005
         (342 letters)



>mm_chr9_87508109_87508850
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatccttatcccacatggacttgaaaataattttcaattctaagctagaaaatttggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatccttatcccacatggacttgaaaataattttcaattctaagctagaaaatttggaa 260

                                                                       
Query: 61  ttattcattataatcttatttaaaaaagttttggaattgcttttagaacctcaatattgt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattcattataatcttattttaaaaagttttggaattgcttttagaacctcaatattgt 320

                                                                       
Query: 121 ttcataagtctgtgtaactccaattcaagaaaactcagtaagagaatatttgctcaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcataagtctgtgtaactccaattcaagaaaactcagtaagagaatatttgctcaaagt 380

                                                                       
Query: 181 tgagatcaattattcactcaagtcttgataacaggaccaattctataccagagagtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagatcaattattcactcaagtcttgataacaggaccaattctataccagagagtgaga 440

                                                                       
Query: 241 gcaggcgtatttaacaaatgttcaggagttaaagagttagatttaacaagtctcgtatga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaggcatatttaacaaatgttcaggagttaaagagttagatttaacaagtctcgtatga 500

                                                     
Query: 301 cactgtgaagaggaatgaaggcccagaagtatgagaaagcct 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgtgaagaggaatgaaggcccagaagtatgagaaagcct 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)