BAC Information

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BAC

Clone NameMSMg01-320E08
Chromosome9 (Build37)
Map Location 64,394,294 - 64,394,576
singlet/doubletsinglet
Overlap geneMegf11
Upstream geneIqch, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320E08.T7 (MSMg01no320_e08.b1)MSMg01-320E08.TJ (MSMg01no320_e08.g1)
ACCAG439549AG439550
length692803
length of high quality
(start - end)
235 (87 - 321)287 (134 - 420)
definitionCHROMAT_FILE: MSMg01no320_e08.b1 PHD_FILE: MSMg01no320_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:45 2005CHROMAT_FILE: MSMg01no320_e08.g1 PHD_FILE: MSMg01no320_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCTGTCTTCGCACCACACCACACCATTTCCTGTCT
CTTTCATAGCACTTTTATTTGCATTATTTTTCCCCATCTTTACAAGTTCT
CTGGAGGTAGATCTGAGGGAATAACCAACTTCCCTTTGTGGAATGCAGTT
ATGAGCCAGAGATTCCAGCTGGGGATGCCACTCAGTTGGTAGAGCGTTTG
CCTAGGTACATGTTAGGTTCGCTCTTCAACACTGCATAAAACCAGCCGAG
ATAACACACACATTGGTAATCCCAGTATGCAGGAGGTTGAGGCAGGAGGC
TCAGAAGTCCAGAGTCATCCTTTTTTATATCCCGCCCCCCAGGCCAGCCT
AGGCTACATGAGACAGTCTTAAATAAATAAATAAATAAATAAATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAATCAG
AGGAGTTACGTCAACTTCCTGAAATTGCCCAGAAAGTTGAAAACTAGGAA
GAGTTTGAGACCAATAGCCTGGGGCTTTTGTTGGTGTCCGACATGACGGC
GTGAATAAGCCAGATAGAACGCAGTATATACACTAACTGCTGCTGCGTAC
TCAGTGTTTGCAGTGCCCTTTGGTGAATTATTAATGTGTCGTTGTGTCAA
GTTCAGTTTTCACAGGGGCCATACTGCCACCTTATCTGCAAG
TCCCCCCCCCCCCCCCCCCCTTCCCACCTCTCCCACCCTATCAACTTTTN
NNNTCCTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCACAGGAAAACC
GGCTGAACACTAACTCACACATCCCTCGGCCCCAGTCTCCTTTGTCTAGC
CTTTCTTCTCTGCCACAGCATCTCTGTAAGGCACAGGTGTGGGTGGAAAG
GAGACTGTGCAGCCATTTGGGGTCCCACACACATTACAGAGGGTTTCTTG
GAAGCTCCAAATAGATAGACCCCCTACCCCTGATCCAGGAGAGCCACTGA
GTAAGACTTTAGACAAAGCCACATCCCATGCCTTCCTTTGGCATAGGTAC
CTTGTGTCAAATCTGCTTANCTAATTACCCCCCCCCCCCCCCGCCTGGCT
CAGCAGAGAGCAGGCAAGAGCACAGGCACTGTAACAAAACAAAGTGTGTG
AACCCGTCATTCCCCTCTCTAAGGGCTTTTTGTTTTTGTTTGATTTGCTT
TACAGGTTTTAAAATTGTTCTTTTGCTTATTCACTTTATATCCCACTCAC
TGCCTGCATCCCAGGCACCCCCTTCCTCAATCCTTCCCCCACACCTCCTC
CCCTTCTCCTCCAAGCAAGTGGGGACACCCCCAGAGAATATCCCCTATCC
CGGAACATCAAGTCTCTTGTGAGACTAAGAACATCCTCCTCCTGCTGAAG
GCCAGACTAGACACCCCAGCTTAGTAAAATAATATCCCCCATGTGCCAGG
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_e08.g1 MSMg01no320_e08.g1 CHROMAT_FILE:
MSMg01no320_e08.g1 PHD_FILE: MSMg01no320_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:45 2005
         (287 letters)



>mm_chr9_64394094_64394780
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttcacaggaaaaccggctgaacactaactcacacatccctcggccccagtctccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 483 aatttcacaggaaaaccggctgaacactaactcacacatccctcggggtcagtctccttt 424

                                                                       
Query: 61  gtctagcctttcttctctgccacagcatctctgtaaggcacaggtgtgggtggaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtctagcctttcttctctgccacagcatctctgtaaggcacaggtgtgggtggaaaggag 364

                                                                       
Query: 121 actgtgcagccatttggggtcccacacacattacagagggtttcttggaagctccaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actgtgcagccatttggggtcccacacacattacagagggtttcttggaagctccaaata 304

                                                                       
Query: 181 gatagaccccctacccctgatccaggagagccactgagtaagactttagacaaagccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gatagaccccctacccctgatccaggagagccactgagtaagactttagacaaagccaca 244

                                                      
Query: 241 tcccatgccttcctttggcataggtaccttgtgtcaaatctgc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcccatgccttcctttggcataggtaccttgtgtcaaatctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)