BAC Information

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BAC

Clone NameMSMg01-320E23
Chromosome9 (Build37)
Map Location 72,775,141 - 72,775,377
singlet/doubletsinglet
Overlap genePygo1
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694
Downstream geneDyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320E23.T7 (MSMg01no320_e23.b1)MSMg01-320E23.TJ (MSMg01no320_e23.g1)
ACCAG439577AG439578
length703769
length of high quality
(start - end)
237 (122 - 358)475 (129 - 603)
definitionCHROMAT_FILE: MSMg01no320_e23.b1 PHD_FILE: MSMg01no320_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:48 2005CHROMAT_FILE: MSMg01no320_e23.g1 PHD_FILE: MSMg01no320_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGAAT
TCTCCCTAATATCTGAGAGAAGAAATGGGTGCCACCGCACTGGGGTCATG
TGCATGCGGAATTTTCACCCAACCAAGACATCAATGGATGTCCGTGGTCA
CATAAGGCAAAAGGAAATGTTGCCGACTTATGTGCACTTTATCCTTTTGG
GGGGCGGTGGATGGAAAGGTTACACAGTAGCCTCTCTGCTTCAGTCATTC
CCCTCAGTCTGATTTTCTGCACAACACCCAGACAAACCCCTTAGGAACCC
AATACTGCTTTTCTGAATAACTGTCCAGTTCCCATCTCAGAGTAAAAGCC
AAAATCTGTTTTGTTGCCTGCCCTCCTCCTCTTCCTCCTCCTCCTCCTCC
TCCTTCTTTTGTTTGTTTTTTTGAAAAAAGAATTCTCTCTGTACCCCTAG
CTGGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAAA
GGCGTGCACCACCACACCCGGCGCCTTCTTTTTTTTTTTTTTTTCTTCTT
TGACAGGGTCTCAATAGCTGGATTGCAACTTACTAGTATAGATCATGCTA
ACCTCAAATTCACAGACATCCACCTGCCTCTGCCTCAGCAGTGTTGGAGC
TAAAGGCCTGCCCACCGCGCCTAGCAAAAGACAAAGTCTTAATGACTCTC
AAA
AAAAACAAAAAAAGAAAACAAACAACATTCCTATCTTCCCTACCCCCCCN
NNTCCCGTATATANTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCGAAAATCACTCTGTAAACCAGGCTGGCC
TCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTA
AAGGCGTGTACCACCACCACCTGGCAGCTTTAAGTAATTTTATATTCAGT
TTTGTTTCCTTTTTTTGAGACACAGTTTCTCTGTATAGCCCTGGCTGTCC
TGGAAGTCACTCTGTAGTCTAGGCTGGCCTCAAACTCACAGAGATCCCCC
TGCCTCTGCCTCTGCCTCCTGCATGCTCCGGTTAAAGGTATGTGCCACCA
CTACCCTGCTTGCTTGCTTGCTTTTAAGATTTATTTATTAATTTTATGTA
TGTGAGTATACTGTTGCTGTCTTCAGACAAACCAGAAGAGAGCATCGGGT
CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAGCTC
AGGACCTCAAGAAGAGCAGTCAGCTGAGCCATCTCTTCACACACACACAC
ACACACACACTCGCACACTCTTTCACACACATACTACGCGCATACACATA
CACAAAATTTCTTTCTTACCGACAACATCTCATGTTCACATATTCCAGAG
GATTCAAGCCCAGGGCTTTGAGCATGTTTCACAAGCCGCCTACCACATGA
GCTACGTCTCCGGTCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_e23.b1 MSMg01no320_e23.b1 CHROMAT_FILE:
MSMg01no320_e23.b1 PHD_FILE: MSMg01no320_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:48 2005
         (237 letters)



>mm_chr9_72775076_72775712
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaagacatcaatggatgtccgtggtcacataaggcaaaaggaaatgttgccgacttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 accaagacatcaatggatgtccgtggtcacataaggcaaaaggaaatgttgccgacttat 243

                                                                       
Query: 61  gtgcactttatccttttggggggcggtggatggaaaggttacacagtagcctctctgctt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 242 gtgcactttatccttttggggggcggtggatggaaaggttacgcagtagcctctctgctt 183

                                                                       
Query: 121 cagtcattcccctcagtctgattttctgcacaacacccagacaaaccccttaggaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cagtcattcccctcagtctgattttctgcacaacacccagacaaaccccttaggaaccca 123

                                                                    
Query: 181 atactgcttttctgaataactgtccagttcccatctcagagtaaaagccaaaatctg 237
           |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 122 atactgcttttctgaaaaactgtgcagttcccatctcagagtaaaagccaaaatctg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)