BAC Information

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BAC

Clone NameMSMg01-320J23
Chromosome9 (Build37)
Map Location 120,144,851 - 120,145,079
singlet/doubletsinglet
Overlap genenone
Upstream geneOxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
Downstream geneLOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J23.T7 (MSMg01no320_j23.b1)MSMg01-320J23.TJ (MSMg01no320_j23.g1)
ACCAG439807AG439808
length731729
length of high quality
(start - end)
233 (130 - 362)229 (128 - 356)
definitionCHROMAT_FILE: MSMg01no320_j23.b1 PHD_FILE: MSMg01no320_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005CHROMAT_FILE: MSMg01no320_j23.g1 PHD_FILE: MSMg01no320_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGGGATCTTCACATGTATTTCGATCACAATCCCTCCTCTACCCC
TCTCCTCCCAGAACCACCTTCGCCCTATCCCAACTCATCGACTCCGTGTC
CTTATTCATTTCTGCTAAACTTTTTGTTTTCGAGCTTTCTTTTTAATTAT
GTATATGTGCCCAGGGAGGCTAGAGAACTCAGATCTCCCTGTGGCAGTCG
TGAGTTGCCCATCACTATAGGTGCTGGGAGTCGAACTTGTGTCCTCTGCA
AGAGCAGTGTGTGCTCTTAGCCACCGAGCCATTTCTTCAGCCCCCTGGCT
TTGTTTTTGTTTGTTTTGTTGCCCACCCCCCCCCACACATCCTGGGCTGG
ACTTTAAATAGCTATGGCCTTAAAAAGACATTGAGCCTTTCATCCTCCTG
CCTCCACTGCCCAAGTCTGGGATGCTCCACCGTGTCTGGTTTATGAGGGG
CTGGGGATGGAACTCAGGCTAGTCTAACATTTTGCCATCTGAGCTGTATC
TCCAGGGCATTCAAGCTCTTCCTCGTGTTCCTGTCTGGAATCTGGCTGAG
AATCTCCTACTGTTGCTGTCAACCAATCTCATCTGTGTCTGTTTCCCACA
CAACTTCACCTTTCGCTGGGGTCTGAGGGTACCCTGTGCCCACCACTCCC
TTTCCATCCATCTTATTCATCTCACCATCCG
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGACTTCTAGGTCTGGGGGAATGGTGG
TGCCATGTGATGTCTTTTGCCCCAACTAAAGAACAGATGCCTTTCCTTAA
AATAAATGAGGTTTAACCTCAAATTTTTATCCAGTAGAATCTAAGTAGAA
AAAAGTGGAATTTCATCTAAAACTGCGTTTACTGGATGTGTCTAAAGACC
TGAGCCTTCCTCACAGGATTTGTTCAAAGGAACTCTTTTGGTTCCTTTAT
TAACAAGAATGGTTCCTCTTCTCTCTTTAGCCAATGATTGTAAGGCTCCA
GGTGTCTTTTGGGTGACTCCGAACCAANTCCCACAAAGGGTATTTAGGAA
ACATACATGAGCACATGGCTATAACCGATTCAACAGCCCGTGCTGAAGCT
GTGGTGTATAGCAGCTACTTAATATTTGTCGAATTGATGCATGGATTGGT
TCAAAATTAAAACAGACCAGCTATCTTGCCGCTCAGTAGGTGTTTCCCTT
ATTCCTTTCTTTGATTGAATTTGATTACCAACATAAAAGATTTAAATGTT
TGCTGGGTTGTAAGATTTTCTAAAACTCGTAAGAAAATATCTTCCCAGCA
CTCGGGAGGCAAAGGCAGGTGGGTTTCTGAGTTCAGGCCAGCCTGGTCTA
CAAAGTGAGTTCCAGGACAGCCAGGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j23.g1 MSMg01no320_j23.g1 CHROMAT_FILE:
MSMg01no320_j23.g1 PHD_FILE: MSMg01no320_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:10 2005
         (229 letters)



>mm_chr9_120144651_120145279
          Length = 629

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaacagatgcctttccttaaaataaatgaggtttaacctcaaatttttatccagtag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaagaacagatgcttttccttaaaataaatgaggtttaacctcaaatttttatccagtag 370

                                                                       
Query: 61  aatctaagtagaaaaaagtggaatttcatctaaaactgcgtttactggatgtgtctaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatctaagtagaaaaaagtggaatttcatctaaaactgcgtttactggatgtgtctaaag 310

                                                                       
Query: 121 acctgagccttcctcacaggatttgttcaaaggaactcttttggttcctttattaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acctgagccttcctcacaggatttgttcaaaggaactcttttggttcctttattaacaag 250

                                                            
Query: 181 aatggttcctcttctctctttagccaatgattgtaaggctccaggtgtc 229
           |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 249 aatggttcctcttctctccttagccaatgattgtaaggctccaggtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)