BAC Information

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BAC

Clone NameMSMg01-320N15
Chromosome9 (Build37)
Map Location 69,952,834 - 69,953,078
singlet/doubletsinglet
Overlap gene6430514L14Rik
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3
Downstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320N15.T7 (MSMg01no320_n15.b1)MSMg01-320N15.TJ (MSMg01no320_n15.g1)
ACCAG439981AG439982
length717720
length of high quality
(start - end)
---245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no320_n15.b1 PHD_FILE: MSMg01no320_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:27 2005CHROMAT_FILE: MSMg01no320_n15.g1 PHD_FILE: MSMg01no320_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGACAGGTACGGGTTTATAGTGAGAGCCTGTCTCAGAATGAATA
AACAAACAAAAGTTTTTTTCCTACAGTGTTATGCATGGTGACACACACTT
GGAATCTCAATGACAGCAACATGGGAGCGAAGAGACAGGGGGATTCCTGG
AACTCACTGGGAATCCGAAGAATGACCCAAGTTGTCCTCATGTCTCTGCA
CATGTATGCATACAAGTGCACCTACCTGAGCATGCACAATACACAACATG
ATAGGTACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGTTTGATAGAACACTCCATGATAGTTAGACAGATAGATAAT
ATATGATAGATAGATGATAGATGGGAATGGTGAAGTGGCGACTGACCTTC
ACCCCCACACTTTCTCATTACAGCATCTGCGATGAGATTCCCCCAAAAGT
CCTTAACATGGGCTGAAACTCTACGCCTCTCTTATACCTTTCAAGGACTC
TTAACATCTCCCAGAATACTATTTCTCTCACCTTGAGTTAGTCAGCTTCG
ACTTATTGTGATCACCGAGTCTCCAGACGGATAGACAGACCGATCATACA
AGCGAGACCATGGAGACCAAGAAATATAGTTGCCTGAGCCAAGCTATTTC
TAATACCACAGAATTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAGGCCATCAGGTCCCCTGG
AGCTGGCACTTGTGAGCCATGTGAGTTGACGCGGATCCTGGGAAGCAAAC
GGATCCTTCGGAAGAGCAGCAAACACTCTGAAGTGCTAAGCTATCTCCTC
AGGCCCCCCCTCCATTGTTTGCTTATATGTGACTTACATATCACAAACTC
TTCTTCATAGCGAACAGAAGAAAGATAGTGGGAGAGAGGGAGGGATGTGG
AGAGGTCTGCGGCGCCCTTTGTGAAGGGTCCAATATTACTCTCTAATTAC
CAACTCTTTTGTATTTGGCCCCCCCCCCTCTAACCCTCTGCCACCAGGAA
CACCTACAGCCTCTCGGAGAAAAAAAAGAAGAAGTACGCACTGAGTCTTG
GGAAAATGCAGACCAGGTGCCAAACACAGGAGCAAGCATCCCGTTCCAGT
AGGAACTGGGAAGCTAATGTGAGGTTTGTTTCTGGAAGATATATATATAT
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGGGAGAG
AGAGAGTTGAAGTCTTTGCCTATGTCAGGAGCTCAGGGATGAATGTGATT
ATAGTCCACTGACTGGATCTCCTGCCAGAGCCAAAATACTACTCAACGTT
AACCTAGGGTCATGCTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_n15.g1 MSMg01no320_n15.g1 CHROMAT_FILE:
MSMg01no320_n15.g1 PHD_FILE: MSMg01no320_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:27 2005
         (245 letters)



>mm_chr9_69952634_69953278
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaggccatcaggtcccctggagctggcacttgtgagccatgtgagttgacgcggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagaggccatcaggtcccctggagctggcacttgtgagccatgtgagttgacgcggat 260

                                                                       
Query: 61  cctgggaagcaaacggatccttcggaagagcagcaaacactctgaagtgctaagctatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggaagcaaacggatccttcggaagagcagcaaacactctgaagtgctaagctatct 320

                                                                       
Query: 121 cctcaggccccccctccattgtttgcttatatgtgacttacatatcacaaactcttcttc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaggcccctcctccattgtttgcttatatgtgacttacatatcacaaactcttcttc 380

                                                                       
Query: 181 atagcgaacagaagaaagatagtgggagagagggagggatgtggagaggtctgcggcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcgaacagaagaaagatagtgggagagagggagggatgtggagaggtctgcggcgcc 440

                
Query: 241 ctttg 245
           |||||
Sbjct: 441 ctttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)