BAC Information

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BAC

Clone NameMSMg01-321E19
Chromosome9 (Build37)
Map Location 66,914,195 - 66,914,533
singlet/doubletsinglet
Overlap genenone
Upstream genePpib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321E19.T7 (MSMg01no321_e19.b1)MSMg01-321E19.TJ (MSMg01no321_e19.g1)
ACCAG440304AG440305
length757751
length of high quality
(start - end)
314 (39 - 352)339 (70 - 408)
definitionCHROMAT_FILE: MSMg01no321_e19.b1 PHD_FILE: MSMg01no321_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:00 2005CHROMAT_FILE: MSMg01no321_e19.g1 PHD_FILE: MSMg01no321_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TCCCTATACCCCACAGTGGAAGGAGAGAAAGCTGGCCTGCAACCTCCATA
TGTGTACCATGTACCCCGTATCCACACACATGTACACATACACAGTAATA
ATAATAAGTAATCGCTTGTAAAAGTCTGGTCTGTATGGACTGGAGATAAA
GCTGCTCACTTGATAAGAGTATTTGCCTAACATACATGAGGTCCTGGGTT
CAGTCTCCAGCCCCCATACACCTGGCATGCTAGTACATGCCTCTAATTCA
AGAGACAAGAGTATTTTAAGTGCAAGGCCATCTTCTACATGCATAATTAG
AGTTTTTTCTGAGACACCGCTCTCCCCAAAAATTGTGGGAGGAGGGAGAA
AAGTATTTCCACCCCCTTTTTCTAAAACTGATGCAGAAGTTAGGGCTACT
CCTGGGTAAAGGGTCTCAGGGACATAATTCACAAAGTGAATGATAAGGAC
GACTACGGAGCCAAATGTCCTCCCACCCATACTTGCCCAGGGGACATCAA
ATAAGGTGGGCAGGTCACTAAAGACATCTGGAAGGAGGTAGGACTCCTGA
GGTTAGAAAAGAGAATGCACTTCCTGCTTAATTTCCGCACACATCTTACA
TAATTTTAATGCGATATGTATACATGTCTAAGCTACAGACCCCATAGAAT
TGATGATCTGCTCCTCGCCTACATTTGCTTGCAGCTCTTCACATTATTTG
CTTTTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGCCCAGGTCCTAGAAGCCACCCCTGCAGA
GGATGCTTTGCAGCCACATCCTGAAGCCTGTGCAATGCCACAGCCCCAGT
GAAGAGGAGAACACTCACCCAGCCCAGGCTCTGTTTACTTTTATCTTTGT
TGGTTTGAAACAGAACCTCGAGTAGCCCAGGGTGGCCTCAAACTTACTAT
GAAGCCAAAGATGCCCTGATCCTCCTGCTCCACCCTCTGGAACATTAGGC
TTATAGGCATGCCCCACTGAGACAGGTTTATGTGGTGCGAGGGAGGAAAC
CCAGGGCTTCATACATGCTAGGGAAGCCCTTTACCAACATCCCCAGGCCC
AGATTCTGACCCCCCTCTGGGGCAGGAGATGGGTGATGTGTACACATGGG
CTCACTTAATCTTCATGGCTAATCCAAGTGGAGGCGAGCTCACTGTATTA
CTATATGGTCATTCTATGAACACCACATATGGTGTTCCGAGGCAGAGAGG
AGGTCGTATAACTTAAGTAAGGCTCGCGCTTTCCTCTCTATTACCTCATT
TCTTCTACATGAAACTGTTTCGCAGATGGCTTTCTTGAGACTCACTTTCC
CTATTTTTCCAGTTGAGACCAATACTCTCGCTTTTGAGTCCTGCCCTCCA
TTGCCCATTTGCAAATAACAAACAGATGCTAAGGGTGGTATACACCCCTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_e19.g1 MSMg01no321_e19.g1 CHROMAT_FILE:
MSMg01no321_e19.g1 PHD_FILE: MSMg01no321_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:00 2005
         (339 letters)



>mm_chr9_66913995_66914733
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcccaggtcctagaagccacccctgcagaggatgctttgcagccacatcctgaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcccaggtcctagaagccacccctgcagaggatgctttgcagccacatcctgaagcct 260

                                                                       
Query: 61  gtgcaatgccacagccccagtgaagaggagaacactcacccagcccaggctctgtttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaatgccacagccccagtgaagaggagaacactcacccagcccaggctctgtttact 320

                                                                       
Query: 121 tttatctttgttggtttgaaacagaacctcgagtagcccagggtggcctcaaacttacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatctttgttggtttgaaacagaacctcgagtagcccagggtggcctcaaacttacta 380

                                                                       
Query: 181 tgaagccaaagatgccctgatcctcctgctccaccctctggaacattaggcttataggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagccaaagatgccctgatcctcctgctccaccctctggaacattaggcttataggca 440

                                                                       
Query: 241 tgccccactgagacaggtttatgtggtgcgagggaggaaacccagggcttcatacatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccccactgagacaggtttatgtggtgcgagggaggaaacccagggcttcatacatgct 500

                                                  
Query: 301 agggaagccctttaccaacatccccaggcccagattctg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggaagccctttaccaacatccccaggcccagattctg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)