BAC Information

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BAC

Clone NameMSMg01-321I12
Chromosome9 (Build37)
Map Location 101,243,955 - 101,244,266
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
Downstream geneEG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I12.T7 (MSMg01no321_i12.b1)MSMg01-321I12.TJ (MSMg01no321_i12.g1)
ACCAG440475AG440476
length735759
length of high quality
(start - end)
314 (44 - 357)260 (72 - 331)
definitionCHROMAT_FILE: MSMg01no321_i12.b1 PHD_FILE: MSMg01no321_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:17 2005CHROMAT_FILE: MSMg01no321_i12.g1 PHD_FILE: MSMg01no321_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGACACTCCTCAGAGGATAGAAACTAAAAGAAAACAGCCTAGACAGA
GAGTGCTCTGGGTCATCACTCGGGTCAGACCGGCAAGATATGTTACAGCT
GGTTTATGCTGGAACCTCAGTGCAAGCAATCTTCTTGCTAAATGGGCGGC
ACCAGAGCCCAGTGGAATATTTTGTAAGATGCTGTCAGTAATTCATGTTT
GCAAGGAAATGTACCCCGGGATGACACCTCGGAGCAGACGTCAAGTCCCC
GACAGGCTGAACCTGTTTTATGAGAATTGACTAAACTTGAAGCAGCTCAC
ACCTTGTTTTTTTGCCCCCGTGCGTGCCTCTCCTGGCATGCTGAACTGGA
TCAGTGGGCCCCCCCCAACACAAAAAAAAACCCTCCACCACTCTTTGCAG
AGGGTTCTGGAAATTCGTTGAAAAGCAGCAGAACTTTGCACTCAGCTTGC
ATACATCCAATACCTGTGTTACCTGCCATCCATCCACAAAATACATCCAT
CCTTCCATCCATCCGAGTAATACTTTGTCAATTACTGAGCTCTTACTGTA
TGCTCACCACGCTACTTGGTGCTGGAAATAACCGTAGACGTGTTTGCTGT
TCTTCTTGCCAATGACTATCCTTTGTTAGCTCACCCTATGAATTTTTAGA
AGTTCTAGTAATTACTCATTTACTTTTGATTTTTC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTAA
TGGGTTTATCTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTTGTCTAGTTCCAGCCCTTCTTAAACCTGTGCAGAGGTTAT
TATTTGATTTTAGCCACCTAAACATCTAGTCCTCGATGTTGTGATTTGTT
TGTTGATGATTGATGTTTGGATTGATTGACTGACTACATGATTATCTTAC
ATATGTCTCTCCCCCCCTCCCCCCCATNATTTTGTTCTCCGGTTTTCCTT
CCTTTGCCCCCCCCCCCATTTATAAAATTTTATTTGTGTTCGGTTATCCG
TCACTTCCGTTATTCTTTTTTTTTACAATCCACTTTTTTTACCTTTGCCC
ATTCCCTACCTGTATTTTATCTGTTTTTTTCATTTTATCGCTTTTTCCCT
TTCTATTTCTTTGTTTCATTATTTGAGACGTTTTATCTTTCCCCTTATTT
TCTTTCTTTTTTTCATCCCTTTTTTCTCTTCCTTTTTCCCCCTCTTCTTC
TTTTTTTTCCCTTTCCTTTTTTTTTTACCACGACCCGCCTTTTATGCAGA
TTTTATTTTTATTTACTTTTACTCCCTGTGTTCGCTTTTTTTTATCGTTC
GTCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i12.b1 MSMg01no321_i12.b1 CHROMAT_FILE:
MSMg01no321_i12.b1 PHD_FILE: MSMg01no321_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:17 2005
         (314 letters)



>mm_chr9_101243751_101244467
          Length = 717

 Score =  532 bits (275), Expect = e-155
 Identities = 302/313 (96%), Gaps = 5/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgacactcctcagaggatagaaactaaaagaaaacagcctagacagagagtgct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgacactcttcagaggatagaaactaaaagaaaacagcctagacagagagtgct 264

                                                                       
Query: 65  ctgggtcatcactcgggtcagaccggcaagatatgttacagctgg----tttatgctgga 120
           ||||||||||||| |||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 265 ctgggtcatcact-gggtcagaccggcaagatatgttacagctggcaggtttatgctgga 323

                                                                       
Query: 121 acctcagtgcaagcaatcttcttgctaaatgggcggcaccagagcccagtggaatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctcagtgcaagcaatcttcttgctaaatgggcggcaccagagcccagtggaatatttt 383

                                                                       
Query: 181 gtaagatgctgtcagtaattcatgtttgcaaggaaatgtaccccgggatgacacctcgga 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaagatgctgtcagtaactcatgtttgcaaggaaatgtaccccgggatgacacctcgga 443

                                                                       
Query: 241 gcagacgtcaagtccccgacaggctgaacctgttttatgagaattgactaaacttgaagc 300
           |||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||
Sbjct: 444 gcagacgtcaagtccccgacaggctgaacctgtgagaagagaattgactaaacttgaagc 503

                        
Query: 301 agctcacaccttg 313
           |||||||||||||
Sbjct: 504 agctcacaccttg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 717
Length adjustment: 9
Effective length of query: 305
Effective length of database: 708
Effective search space:   215940
Effective search space used:   215940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)