BAC Information

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BAC

Clone NameMSMg01-322H21
Chromosome9 (Build37)
Map Location 90,951,473 - 91,105,746
singlet/doubletdoublet
Overlap geneEG434428
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneLOC621576, Zic1, Zic4, LOC331000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322H21.T7 (MSMg01no322_h21.b1)MSMg01-322H21.TJ (MSMg01no322_h21.g1)
ACCAG441175AG441176
length728721
length of high quality
(start - end)		683 (46 - 728)274 (379 - 652)
definitionCHROMAT_FILE: MSMg01no322_h21.b1 PHD_FILE: MSMg01no322_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:28 2005CHROMAT_FILE: MSMg01no322_h21.g1 PHD_FILE: MSMg01no322_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,105,068 - 91,105,746)(90,951,473 - 90,951,746)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCAGATGACTTTATGGCTGTCATATCACATTGTGAATTCCCGA
GCATAGGGATTAAGTTGCACTCTTTTTATCCCCTGAGTGAATAGTTTGAG
GTAGGAAGTTTGTGCATTTAAGCAATCAGAAAACATGGTCATAGTAGCTT
TGAAAAATCATCATTGAACTTCTGGAACTAAAAAAGTCTCTTAAAGCCAC
AGAACAGTATGGAGATCCCATGACCAAAGACAGATGGCATTTGCATCACA
TCTTAACTCTGATATGCACTAATTTTTTTGAGATAGTATGTCACTAAGTT
TCTCAAACATATCTTGAATTTCGACTCTTTCCTCCTCAGTCTCCCTGTAG
GTAAAGTTGTAGACATATACCTGAGTTCCTTGAGTACAATTCTCTTCGCT
CATTGCTTTGCAATGCCATATGTTAAATCCTTCTGTGATGCTCAGGTTGG
TTGGAGGCTCTCAATTCTATTTTATTTCCCCATCTTTTTGCATACAAATG
TCATATTATTTTAACCATTTTGTATTTGTCATTCTTGGACTTTGTTCCTT
CCTTCAAATAAAAAAGATAAGTCTAAAAATTTTATTATTTTATTATTTTT
TAGCTTAGCAAAGTGACGTGTTTTGTCATGGCTTCTTTATGCTTGCTTTG
TTCTCATTCATTCTCCTTCCCCAGGGCT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAAAAAAACCTTGTTCTATGATTCCAATGCACCACCATA
TCTATCTAAACTCCAAGTTACTCTTAATGCAAATAGCATGAACTTTGATT
TGAGATTCAGTTTTGAATAGAGACTCCCTAGTTTTCATTGATATATGAAA
ACTAAACAAACTGGGTATTTAATTCACTGTGTACTTATTAGGTATCCTTA
TTGAATGCACATACCTGCCCTGCACTATGGATTTCCATTCCATTATCCCT
GTCCATGATTACATANATACNTCTTGAGAATAAAGAACAATATCTTACTT
TGCATTGTTTTTTCTCCACTCTACCCACGATTCTTTAGTTAGGGGAAGGT
TGAGATTTAACTGTTCATATAACTAAACAGCCAAAATGACCTTCCTGCTC
TTTCTTTCAACTGGTGATTAAGCTCTGACTAATGGCAGGCAGATGGAAAT
TATGGCTGAAATGTGTATTGTGATTTATTCACAAAGATTCATTCCAAGTA
ATTTAGGTAAAAAATTAAAATAAAGCAATCAAACAAATAATAAAACAATT
TATAAGTGAGATGCTCATTGAAGTGGGGCTTCCAAAAACCAAGAGCTGTG
ATCATTCCAAAAGGAAAAGGAAATCCTTCTGGTGTGTCTCATGAAAGGCC
TGATCTCTTGTGAGACTAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_h21.b1 MSMg01no322_h21.b1 CHROMAT_FILE:
MSMg01no322_h21.b1 PHD_FILE: MSMg01no322_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:28 2005
         (683 letters)



>mm_chr9_91104969_91106051
          Length = 1083

 Score = 1290 bits (667), Expect = 0.0
 Identities = 676/679 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcagatgactttatggctgtcatatcacattgtgaattcccgagcataggga 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaattcactcagaggaatttatggctgtcatatcacattgtgaattcccgagcataggga 719

                                                                       
Query: 65  ttaagttgcactctttttatcccctgagtgaatagtttgaggtaggaagtttgtgcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttaagttgcactctttttatcccctgagtgaatagtttgaggtaggaagtttgtgcattt 659

                                                                       
Query: 125 aagcaatcagaaaacatggtcatagtagctttgaaaaatcatcattgaacttctggaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagcaatcagaaaacatggtcatagtagctttgaaaaatcatcattgaacttctggaact 599

                                                                       
Query: 185 aaaaaagtctcttaaagccacagaacagtatggagatcccatgaccaaagacagatggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaaaagtctcttaaagccacagaacagtatggagatcccatgaccaaagacagatggca 539

                                                                       
Query: 245 tttgcatcacatcttaactctgatatgcactaatttttttgagatagtatgtcactaagt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 538 tttgcatcacatcttaactctgatatgcactaagttttttgagatagtatgtcactaagt 479

                                                                       
Query: 305 ttctcaaacatatcttgaatttcgactctttcctcctcagtctccctgtaggtaaagttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttctcaaacatatcttgaatttcgactctttcctcctcagtctccctgtaggtaaagttg 419

                                                                       
Query: 365 tagacatatacctgagttccttgagtacaattctcttcgctcattgctttgcaatgccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tagacatatacctgagttccttgagtacaattctcttcgctcattgctttgcaatgccat 359

                                                                       
Query: 425 atgttaaatccttctgtgatgctcaggttggttggaggctctcaattctattttatttcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgttaaatccttctgtgatgctcaggttggttggaggctctcaattctattttatttcc 299

                                                                       
Query: 485 ccatctttttgcatacaaatgtcatattattttaaccattttgtatttgtcattcttgga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccatctttttgcatacaaatgtcatattattttaaccattttgtatttgtcattcttgga 239

                                                                       
Query: 545 ctttgttccttccttcaaataaaaaagataagtctaaaaattttattattttattatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctttgttccttccttcaaataaaaaagataagtctaaaaattttattattttattatttt 179

                                                                       
Query: 605 ttagcttagcaaagtgacgtgttttgtcatggcttctttatgcttgctttgttctcattc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttagcttagcaaagtgacgtgttttgtcatggcttctttatgcttgctttgttctcattc 119

                              
Query: 665 attctccttccccagggct 683
           |||||||||||||||||||
Sbjct: 118 attctccttccccagggct 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no322_h21.g1 MSMg01no322_h21.g1 CHROMAT_FILE:
MSMg01no322_h21.g1 PHD_FILE: MSMg01no322_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:28 2005
         (274 letters)



>mm_chr9_90951273_90951946
          Length = 674

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattctttagttaggggaaggttgagatttaactgttcatataactaaacagccaaaatg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattctttagttaggggaaagttgagatttaactgttcatataactaaacagccaaaatg 260

                                                                       
Query: 61  accttcctgctctttctttcaactggtgattaagctctgactaatggcaggcagatggaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttcctgctctttcttacaactggtgattaagctctgactaatggcaggcagatggaa 320

                                                                       
Query: 121 attatggctgaaatgtgtattgtgatttattcacaaagattcattccaagtaatttaggt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 attatggctgaaatgtgtattgtgatttattcacaaatattcattccaagtaatttaggt 380

                                                                       
Query: 181 aaaaaattaaaataaagcaatcaaacaaataataaaacaatttataagtgagatgctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaattaaaataaagcaatcaaacaaataataaaacaatttataagtgagatgctcat 440

                                             
Query: 241 tgaagtggggcttccaaaaaccaagagctgtgat 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagtggggcttccaaaaaccaagagctgtgat 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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