Query= MSMg01no324_h23.b1 MSMg01no324_h23.b1 CHROMAT_FILE:
MSMg01no324_h23.b1 PHD_FILE: MSMg01no324_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:49 2005
(588 letters)
>mm_chr9_9946418_9947410
Length = 993
Score = 915 bits (473), Expect = 0.0
Identities = 540/567 (95%), Gaps = 11/567 (1%)
Strand = Plus / Minus
Query: 28 gtcaatatggcatatgcatcaactgacaaggaaactgtcttatcaatgttctaatgcttg 87
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gtcaatatggcatatgcatcagctgacaaggaaactgtcttatcaatgttctaatgcttg 934
Query: 88 aaagagtcaccatgaccatgacaagtcttagaaaagaaagaactttaacttaattggagt 147
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 933 aaagagtcaccatgaccatgacaagtcttagaaaagaaagaacattaacttaattggagt 874
Query: 148 tagttggagctacttaccattccgaagtttagtccattgtcatcagggtaggaagcatcg 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 873 tagttggagctacttaccattccgaagtttagtccattgtcatcagggtaggaagcattg 814
Query: 208 tggcagcacgccaatagacatgtgcccatgagctactcgattcaaagcaaaggccactgt 267
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 813 tgacagcacgccaatagacatgtgcccgtgagctactcgattcaaagcaaaggccactgt 754
Query: 268 gctatctctccagcccatgaagacacactatctcggagcttaccacaatgccgatggaag 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 753 gctatctctccagcccatgaagacacactagctcggagcttaccacaatgccgatggaag 694
Query: 328 gttttctaccttaagaatccctccctgttttt-ggttccagtttggcattttatga---t 383
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 693 gttttccaccttaagaatccctccctgttttttggttccagtttggcattttatgaattt 634
Query: 384 tttttaaaatcttttctctt----agtttatctttgtcctaaagccatacagatcccaac 439
|||||| |||||| | || |||||||||||||||| |||||||||||||||||||
Sbjct: 633 ttttta---tcttttttttttttcagtttatctttgtcctcaagccatacagatcccaac 577
Query: 440 ttatggggcaaaaatgggtcccgcatctgcttggtgccagggacactgcaggacaacgtt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttatggggcaaaaatgggtcccgcatctgcttggtgccagggacactgcaggacaacgtt 517
Query: 500 ctagggttgaggaaggtccagtctggtatccccgcaaacctgctgaagttgggcttcaac 559
||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 516 ctagggttgaggaaggtacagtctggggtccccgcagacctgctgaagttgggtttcaac 457
Query: 560 tttcagattcccctgggtacctcggaa 586
|||||||||||||||||||| ||||||
Sbjct: 456 tttcagattcccctgggtacttcggaa 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 993
Length adjustment: 10
Effective length of query: 578
Effective length of database: 983
Effective search space: 568174
Effective search space used: 568174
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_h23.g1 MSMg01no324_h23.g1 CHROMAT_FILE:
MSMg01no324_h23.g1 PHD_FILE: MSMg01no324_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:50 2005
(551 letters)
>mm_chr9_9779854_9780805
Length = 952
Score = 957 bits (495), Expect = 0.0
Identities = 538/553 (97%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 1 atttggaaagctctaattttaggaggatcattttaaattatcagtcaagtcacacagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggaaagctctaattttaggaggatcattttaaattatcagtcaagtcacacagtaa 260
Query: 61 atacacatacataa--ggaagacaacagcaagagaaaaaaagcaattttctaccaatttg 118
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 261 atacacatacataaaaggaagacaacagcaagagaagaaa-gcaattttctaccaatttg 319
Query: 119 actgcaaggtacattgtgcaatttcaggtaacttgcatcttcagaaggcacaaagaaatt 178
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgcaaggtacgttgtgcaatttcaggtaacttgcatcttcagaaggcacaaagaaatt 379
Query: 179 tttagacatagggagtaaggtgtatttaaaaaagaacactttaaaaagtgtcattttaca 238
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 tttagatatagggagtaaggtgtatttaaaaaagaacactttaaaaagtttcattttaca 439
Query: 239 gtaggtggtatagcatatatttctgacacaaaaactggagaacagaagaagcagtcttgt 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 ataggtggtatagcatatatttctgacacaaaaactggagaacagaagaagtagtcttgt 499
Query: 299 aagtacaaagtagcacacatggcatgactacgcttcacacatacacagttctgcccgaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 aagtacaaagtagcacacatggcatgactacgcttcacacatacacagttctgtccgaac 559
Query: 359 atcttcctgaaaacgatggtgggttcaccaccatacattgacaacataactgaaagaaag 418
||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 560 atcttcctgaaaatgatggtgggttcaccaccatacatggacagcataactgaaagaaag 619
Query: 419 aactaagacgatgtcactcaccactcacctctgtatttatttactgtgtgaaatcttaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aactaagacgatgtcactcaccactcacctctgtatttatttactgtgtgaaatcttaga 679
Query: 479 aaatttgcatcttaaaatgagaatgataaacacttcaaatggttaaaatcagttatttaa 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 680 aaatttgcatcttaaaatgagaatgaaaaacacttcaaatggttaaaatcagttatttaa 739
Query: 539 aactatgagctct 551
|| ||||||||||
Sbjct: 740 aaatatgagctct 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
