NNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCC
GCGGAATTCCTTTTAACCATTACCTCATCTTGAATGGGGGTGATCTTCAT
GTGTTTCTAGAGAATTTGTATTCCAAGGACTTCAAAAACTCATATTCTTT
GCATTATAAAAAAAAAAAGCATAGGTCTTTCCCAAGCTTCCTGAAATGTC
CTAACAGAGATGGTACCAAAGAAAGAACTTACTACATCACTTTATAGTTA
TTTTTTTTCCTTTCTAATTTTTGACATCAAAGAGCTGCTGAAGACTGAGA
GATCTAGGATCTTTGTAGATATCTCTTATCTCCCTCGAGCACTTGACAAT
CACTCCAGCAGCTGATCCATCCCAGAGAGACTGGTAAGTTGTCTGCTCTT
AGAATCCAGCAGCCTGCGGAACTGAAGCATTCAGAATGTTTTTCTAAAGC
CTCAGTGATTTTCATATATAACCTCTAAATAAAAACATTCTCTAATTATT
TGTAACATCTGTAAAGTATCTAAATCAGATGCAACGGACCTGAGCATTAT
GTTCTCTTGCATAATGTCTTGTCTTCTTTCTGGACTAACTTTTCCTGTTT
TTGATTGCTAATATTGGTTTTTAACTTGATACATTGGGGAAAAGGAGTAT
CAGTTGACAGACTAGCCCATATATAGGCCTATGGGTTTGTTTGTGAGGCA
TTCTCATTGC

NNNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAACTCACAGCAGCT
CTCTTAAGCATAAGAGTTAGATAATCTAGTTCCAGCATGAATGTAAAAGG
GCTTATATGGCCTCATCCCTAAATGAGAAGATATTGAAAGCTGATGGATA
TTGAGGAAGAGAGATTAGTTTTTATTTGGGGTTGCAATCACAGATAGGTT
CCTCATTCTCTTGTGAATGGGTACATAGTCATGCATATGAAAGAATTTCT
AATTTAAAGCAATGAATTATTTTTAAAAAATTAAGGAGGAAGAGGGAGAG
CCATGAAGTTGGAGTGGGGATATGTTAGGGGGCATATGGGAGAGTTAGAA
GTTAGTAGTGGGATATGATTCCCCCCCTTTTTGNTNTTCTCGGGCCTCTC
GTCTTGTCTTTTTCTCGTTCTTTTTCCGGCCCTTTTTTTTTCCCCCCTTT
TTCCCCTTTTTCCGTCTGTTTTGCTTTTCCTCTTTTTTCCTGACCTCTTC
CCCCCGCCCTGTTTTTTTCTTTTTCCCCCCCGTTCCTCCTTTTTTTTCTT
CTCCTTCCCCCGTCCTTTCCCCCCCCCTTTTCCCCTTTTTTTAACTTCCC
ACCTTTTTTTCTTCTTCCCTTTCTTTTCTTTTTCGCTATTTTTTATTTAT
TACCCTTCCTTCTCATTTTATTCC

Query= MSMg01no324_k11.b1 MSMg01no324_k11.b1 CHROMAT_FILE:
MSMg01no324_k11.b1 PHD_FILE: MSMg01no324_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:01 2005
         (664 letters)



>mm_chr9_33567415_33568478
          Length = 1064

 Score = 1216 bits (629), Expect = 0.0
 Identities = 655/673 (97%), Gaps = 15/673 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattccttttaaccattacctcatcttgaatgggggtgatcttcatgtgtttctagag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ggaattccttttaaccattacctcatcttgaatgggggtgatcttcatgtgtttctagag 925

                                                                       
Query: 67  aatttgtattccaaggacttcaaaaactcatattctttgcattat--------------- 111
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 924 aatttgtattccaaggacttcaaaaactcatattctttgcattatcaaaaaaaaaaaaaa 865

                                                                       
Query: 112 aaaaaaaaaaagcataggtctttcccaagcttcctgaaatgtcctaacagagatggtacc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aaaaaaaaaaagcataggtctttcccaagcttcctgaaatgtcctaacagagatggtacc 805

                                                                       
Query: 172 aaagaaagaacttactacatcactttatagttattttttttcctttctaatttttgacat 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 aaagaaagaacttactacatcactttatagttattttttttcctttctaatttttaacat 745

                                                                       
Query: 232 caaagagctgctgaagactgagagatctaggatctttgtagatatctcttatctccctcg 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaagagctgctgaagactgagagatctaggatctttgtagatatctcttatctccctcg 685

                                                                       
Query: 292 agcacttgacaatcactccagcagctgatccatcccagagagactggtaagttgtctgct 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcacttgacaatcactccagcagctgatccatcccagagagactggtaagttgtctgct 625

                                                                       
Query: 352 cttagaatccagcagcctgcggaactgaagcattcagaatgtttttctaaagcctcagtg 411
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttagaatccagcagcctgtggaactgaagcattcagaatgtttttctaaagcctcagtg 565

                                                                       
Query: 412 attttcatatataacctctaaataaaaacattctctaattatttgtaacatctgtaaagt 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 attttcatatataacctctaaataaaaacattctctaattatttgtaacatctgcaaagt 505

                                                                       
Query: 472 atctaaatcagatgcaacggacctgagcattatgttctcttgcataatgtcttgtcttct 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctaaatcagatgcaacggacctgagcattatgttctcttgcataatgtcttgtcttct 445

                                                                       
Query: 532 ttctggactaacttttcctgtttttgattgctaatattggtttttaacttgatacattgg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctggactaacttttcctgtttttgattgctaatattggtttttaacttgatacattgg 385

                                                                       
Query: 592 ggaaaaggagtatcagttgacagactagcccatatataggcctatgggtttgtttgtgag 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaaaaggagtatcagttgacagactagcccatatataggcctatgggtttgtttgtgag 325

                        
Query: 652 gcattctcattgc 664
           |||||||||||||
Sbjct: 324 gcattctcattgc 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)