BAC Information

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BAC

Clone NameMSMg01-324L05
Chromosome9 (Build37)
Map Location 39,632,912 - 39,633,225
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970
Downstream geneOlfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L05.T7 (MSMg01no324_l05.b1)MSMg01-324L05.TJ (MSMg01no324_l05.g1)
ACCAG442780AG442781
length756852
length of high quality
(start - end)
317 (48 - 364)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no324_l05.b1 PHD_FILE: MSMg01no324_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:05 2005CHROMAT_FILE: MSMg01no324_l05.g1 PHD_FILE: MSMg01no324_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGGGTAGATACCCTGGTGATCTTATGAAAGATAATCTATGAAT
TCCATACAACCCAATAAAGATCTGAGGTAATTCTTGGTAGACATAGAAAA
AAATGTTTTAAAATTTGTTTTTTTTAATCTTCTTTTATCTTTCTTTTTTA
AAATATTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCC
AAATGTCCCCCATACCCTCCCTCCCACTCCCCTACCCACCCATTCCCACA
AAAGCTTCAGAGTTGACTAAACAATTTCTAATGAAATGAATACTATGGTA
TGTATCATCATACCAATTTCAAGTTATAATATAGAGCTTGAACAATGAAA
AAAGTGTGGTATTTGTACAAAAAAAAGAAATGGTAAGTTTAATTTAACAA
TCCATCTGGTGAAACCCCCAGAGAGTAAACCCCCTTTTTTTTTTTTGGAA
AAAAATGGCCAAAAAAAAAACAACGGGGAGAAAAAAAAAATTTTTTTTTT
TACCCCAAAAAGAGGGGGGGGAAAAAAAGGGGGGAAAAAACAATATTTCC
CCCCCCCCCCCCCCCATTATAAAAAAAAATTTTTTTTCCCCTCTTTTTTT
TTGTATACTTTTCTATCGTGGATTTGAATATTTCTCTCCTCTTCTTATAA
ATAATAATTAATTTTCCTCTTCCCTTTAACATATAAATTATGCTCTTCAC
AAGACA
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGGTTAGTTGATCAACAAAAT
CAACTAACCTGGACTCTGGGACCCTCAGAATCTGAACAACTGAACAAAGA
ACAGGCTGGACATAGGCCTCCCTGCACGTGTGTAGCAGATGTGCAGCTTG
GTCTTCCGTGGATCTTGAAAAAAATGGAACGGGGTTACCCCAAAGTGGTT
GCCTGTTCGTAGGATATGTTCTACTGGGTTGCTTTATCTGGTCTCAGTTC
CAGAGGATGTATCTGGCCTCGAAGAAATTTGAAGTGCTGGGGTTGGGGGT
GGGTGGTGGTGGNNATAANNATTTTTNCTTACTCTATCCTTTCATAATAA
TTATAAAACTTAAATATTAAATAACCCCCCTCTTTTTCATTACAATCATT
CACTTACTAATTATTTTAATATTTTAATCTTCCTTTAATTTTTCCTTTTT
ACTATACTTTATATTTTATATTTAGATATTTTCTAATACTAATGTATTAT
TTTATCTTACTCTCTATTCTCTTCTTAATCTTCACTAATATTATTATTAT
TATTTTAACTTTTTTTACGAATACCTTCTTATCTATTTCTATACTATATT
TTATCTACATGAACAACCTTATTGTTTCATGCTTATACTTTATTTCTTCT
TTCTTCTCTTACCTTTCTCTTCTATTATCTCAATACACTTATTCTTTATT
CTATATTTTCTCTAGTATTTCTCTGTATTACAAATATTTTTTTTATATAT
AATTTTCTCTCTTTTATAATTACTTTTTTTAATATTATACGTTTTTATTA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l05.b1 MSMg01no324_l05.b1 CHROMAT_FILE:
MSMg01no324_l05.b1 PHD_FILE: MSMg01no324_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:05 2005
         (317 letters)



>mm_chr9_39632881_39633598
          Length = 718

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%), Gaps = 3/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctctgggtagataccctggtgatcttatgaaagataatctatgaattccatacaa 62
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaattctctgggtagatatcctagtgatcttatgaaagataatctatgaattccatacaa 286

                                                                       
Query: 63  cccaataaagatctgaggtaattcttggtagacatag-aaaaaaatgttttaaaatttgt 121
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 285 cccaataaagatctgagataattcttggtagacatagaaaaaaaatgttttaaaatttgt 226

                                                                       
Query: 122 tttttttaatcttcttttatctttcttttttaaaatattttttattacatattttcctca 181
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 225 tttttttaatcttcttttatctttctttttaaaaata-tttttattacatattttcctca 167

                                                                       
Query: 182 attacatttccaatgctatcccaaatgtcccccataccctccctcccactcccctaccca 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 166 attacatttccaatgctatcccaaaagtcccccataccctccctcccactcccctaccca 107

                                                                       
Query: 242 cccattcccacaaaagcttcagagttgactaaacaatttctaatgaaatgaatactatgg 301
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 106 cccattcccacaaaagcttcagagttgactaaacaa-ttctaatgaaatgaatactatgg 48

                           
Query: 302 tatgtatcatcatacc 317
           ||||||||||||||||
Sbjct: 47  tatgtatcatcatacc 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)