BAC Information

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BAC

Clone NameMSMg01-325B05
Chromosome9 (Build37)
Map Location 48,595,876 - 48,767,436
singlet/doubletdoublet
Overlap geneZbtb16, Htr3a, Htr3b
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneUsp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325B05.T7 (MSMg01no325_b05.b1)MSMg01-325B05.TJ (MSMg01no325_b05.g1)
ACCAG443055AG443056
length802731
length of high quality
(start - end)
294 (45 - 338)655 (77 - 731)
definitionCHROMAT_FILE: MSMg01no325_b05.b1 PHD_FILE: MSMg01no325_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:32 2005CHROMAT_FILE: MSMg01no325_b05.g1 PHD_FILE: MSMg01no325_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,767,146 - 48,767,436)(48,595,876 - 48,596,530)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTCTGCACCGTCTCACCAGGCAGCTCTTACAACAGTACCACAAG
GAGGTCAGACCAGTTTACAACTGGGCTGAGGCCACCACTGTCTACCTGGA
CCTTTGCGTCCATGCTGTATTGGATGTGGTAAGGATGATCTGCCCTTGCT
TGTTCTTGTCCTGATTGATTGACTGATTGAATAATTGATTGATCGAGATG
GGTCTCATGTAGCTCAGGCTGGCCCCAAATTCACTTTGTGGCTAAGGATG
GCATTGGGCTTCTGGGTACTGGGATCACAGGTTGCATATCTCCACAGCCA
ACTTGTTGCGTCTCTGCCTGCTTTTATGCAAAAGCTCGGGAGAGTGTTTT
ATCTAAAGGNNNNNGATTGACCTGCTGGGGACTAGATGGAAATCAGCATC
CTTAGAGAAGGAAATTGAATTTACTTATCCNTTTCCCCTGCTTGTCCCCN
AAGGGGGGTAAAAAAATAAACTGGCCCGCCCTTGGGGTTTGCCACTTTGT
AAACCCCCTGGCCCCCTAAAAAAAGNNNAAGCGCNGCCCCCCAACCCTTT
AATTTTCACGGTCCGGAAAATTTTGAAAAAAAAATATTGGTAAACGCAAC
ATATTCTTTTNNNCNNTGGCCCAGGAAAACTTTTTTTATAAAAATTTATT
TTTTTTTTTTANCNNNNCNGNNATTTNNNNTTTCTTTCCACAATTTNGGA
AGGGGAGAGCGGCCGGTGTTTGGGCGGTNNNNNNNNNNNNNNNTACTANN
NC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTTACCAAGAAAACTTGCAT
CTAACTTCATTTCCAAAAGATCAAACGCGTTACCCAGAATCTCCATCCCT
GTACCCTTCAGCACCAGGTAATGAGGCTTTTTATTAAGTAAATATTTCAC
ATTAACCTCATCCGTTTCTATCACTTAGAAATTCCAATCTATAAAATCAA
ATCAGCTTAATCATGTTTAGATTAGATGTTGCATCCTGGAGGCAATTGGA
ATTGTTTACATCTCTCCTCTCCTTGGCACACTGGAGCATCAAGATCTGAA
GGTATCAGGAGAGAAAACAGGAAGGCTGCGGCCCCTTCCCACGCCCACGG
CCTCTCCCTGATGCCCATCTCTTTGCTTAGAGTCTGTGTCGGTGAAATCA
ACCCAGCAGCCTTGGCATCTCCACACATTCTTTCATATGAGCTGACAAAA
GCCCTGAAAGTCTACTGCCCTGGGCTCTGCCAGCTCCAGAGTGCTCCCTG
AGTCCCTAGGAAGAGAAGATGACATCCGGGTGGAATGAAAACCATGGAAG
CCCTTCATGTTTTGGGGTGTGCATGTAGGTTGTCCCGTGTGAACATTTTC
TAGACCACCCTGTAGCTCAGAATCACGGAGGAAGCATAAGCCCTTCCCAG
AGGAAAAGGAAAACGGAAGACAAGCCAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_b05.b1 MSMg01no325_b05.b1 CHROMAT_FILE:
MSMg01no325_b05.b1 PHD_FILE: MSMg01no325_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:32 2005
         (294 letters)



>mm_chr9_48767070_48767763
          Length = 694

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctctctgcaccgtctcaccaggcagctcttacaacagtaccacaaggaggtca 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaattcttctctgcaccgtctcaccaggcagctcttacaacagtaccacaaggaggtca 308

                                                                       
Query: 64  gaccagtttacaactgggctgaggccaccactgtctacctggacctttgcgtccatgctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaccagtttacaactgggctgaggccaccactgtctacctggacctttgcgtccatgctg 248

                                                                       
Query: 124 tattggatgtggtaaggatgatctgcccttgcttgttcttgtcctgattgattgactgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tattggatgtggtaaggatgatctgcccttgcttgttcttgtcctgattgattgactgat 188

                                                                       
Query: 184 tgaataattgattgatcgagatgggtctcatgtagctcaggctggccccaaattcacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tgaataattgattgatcgagatgggtctcatgtagctcaggctggccccaaattcacttt 128

                                                              
Query: 244 gtggctaaggatggcattgggcttctgggtactgggatcacaggttgcata 294
           |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127 gtggctaaggatggcattgggcttctgggtactgggatcacaagttgcata 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no325_b05.g1 MSMg01no325_b05.g1 CHROMAT_FILE:
MSMg01no325_b05.g1 PHD_FILE: MSMg01no325_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:32 2005
         (655 letters)



>mm_chr9_48595676_48596730
          Length = 1055

 Score = 1259 bits (651), Expect = 0.0
 Identities = 654/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttttaccaagaaaacttgcatctaacttcatttccaaaagatcaaacgcgttaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttttaccaagaaaacttgcatctaacttcatttccaaaagatcaaacgcgttaccca 260

                                                                       
Query: 61  gaatctccatccctgtacccttcagcaccaggtaatgaggctttttattaagtaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatctccatccctgtacccttcagcaccaggtaatgaggctttttattaagtaaatatt 320

                                                                       
Query: 121 tcacattaacctcatccgtttctatcacttagaaattccaatctataaaatcaaatcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacattaacctcatccgtttctatcacttagaaattccaatctataaaatcaaatcagc 380

                                                                       
Query: 181 ttaatcatgtttagattagatgttgcatcctggaggcaattggaattgtttacatctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatcatgtttagattagatgttgcatcctggaggcaattggaattgtttacatctctc 440

                                                                       
Query: 241 ctctccttggcacactggagcatcaagatctgaaggtatcaggagagaaaacaggaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctccttggcacactggagcatcaagatctgaaggtatcaggagagaaaacaggaaggc 500

                                                                       
Query: 301 tgcggccccttcccacgcccacggcctctccctgatgcccatctctttgcttagagtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcggccccttcccacgcccacggcctctccctgatgcccatctctttgcttagagtctg 560

                                                                       
Query: 361 tgtcggtgaaatcaacccagcagccttggcatctccacacattctttcatatgagctgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcggtgaaatcaacccagcagccttggcatctccacacattctttcatatgagctgac 620

                                                                       
Query: 421 aaaagccctgaaagtctactgccctgggctctgccagctccagagtgctccctgagtccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagccctgaaagtctactgccctgggctctgccagctccagagtgctccctgagtccc 680

                                                                       
Query: 481 taggaagagaagatgacatccgggtggaatgaaaaccatggaagcccttcatgttttggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taggaagagaagatgacatccgggtggaatgaaaaccatggaagcccttcatgttttggg 740

                                                                       
Query: 541 gtgtgcatgtaggttgtcccgtgtgaacattttctagaccaccctgtagctcagaatcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgcatgtaggttgtcccgtgtgaacattttctagaccaccctgtagctcagaatcac 800

                                                                  
Query: 601 ggaggaagcataagcccttcccagaggaaaaggaaaacggaagacaagccagcca 655
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 ggaggaagcataagcccttcccagaggaaaaggaaaacggaagaaaagccagcca 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)