Query= MSMg01no325_o18.b1 MSMg01no325_o18.b1 CHROMAT_FILE:
MSMg01no325_o18.b1 PHD_FILE: MSMg01no325_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:31 2005
(634 letters)
>mm_chr9_122440419_122441453
Length = 1035
Score = 756 bits (391), Expect = 0.0
Identities = 436/465 (93%), Gaps = 24/465 (5%)
Strand = Plus / Minus
Query: 1 tgtctcctaaaatgcaaag-aaaaaaaaaagtagaacaatgggaaactttcagcccagca 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtctcctaaaatgcaaagaaaaaaaaaaagtagaacaatgggaaactttcagcccagca 394
Query: 60 gttctattatcagctgtggacagctctttctcctccctgttctgaactgaattgttcttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gttctattatcagctgtggacagctctttctcctccctgttctgaactgaattgttcttt 334
Query: 120 ctttcctcgtatgtgttcatcacagctggaaaggccatctaagctcggagaaacaccagc 179
||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 333 cttccctcgtatgtgttcatcacagctggaaaggccatctaagctctgagaaacatcagc 274
Query: 180 aaaaccactcagctttgttaaagtgagatggcgcatcctcctttcacctcaaagctcttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaaaccactcagctttgttaaagtgagatggcgcatcctcctttcacctcaaagctcttc 214
Query: 240 tgctctttgttggtcagagcagaggcaacccaatttgttctaga-----------ggttt 288
||||||||||| ||||||||||||||||||||| |||||
Sbjct: 213 tgctctttgtt------------ggcaacccaatttgttctagaggtttcatgttggttt 166
Query: 289 catgttggtgaggtggcccttaagactagtggccacactctcaatatgaccagtgatcca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catgttggtgaggtggcccttaagactagtggccacactctcaatatgaccagtgatcca 106
Query: 349 aaaccctggaataactcgctgcagaatgtagctcaatggcagagtgtttgcctagcatgt 408
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aaatcctggaataactcgctgaagaatgtagctcaatggcagagtgtttgcctagcatgt 46
Query: 409 gcaaaaccctggactctgcctgaaaaccaaaacaaataaaacaaa 453
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gcaaaaccctggactctgcctgaaaaccaaaacaaataaaacaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_o18.g1 MSMg01no325_o18.g1 CHROMAT_FILE:
MSMg01no325_o18.g1 PHD_FILE: MSMg01no325_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:31 2005
(654 letters)
>mm_chr9_122262479_122263532
Length = 1054
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%)
Strand = Plus / Plus
Query: 1 agtgtatgcacagtgttctcagctccctgtgtcttgcctaaccctgatatcttatgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agtgtatgcacagtgttctcagctccctgtgtcttgcctaaccctgatatcctatgctac 260
Query: 61 cctgggattttaccaggaaaagtctaacactaggagtaatcctattttgtacctccggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggattttaccaggaaaagtctaacactaggagtaatcctattttgtacctccggaa 320
Query: 121 gtatgatgaaaacacctcatttctttacagatggggagatgatattgataaagcaagcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgatgaaaacacctcatttctttacagatggggagatgatattgataaagcaagcga 380
Query: 181 ttataagctgccatcctatagcattttggagcatgtaattctttcccttcgtggctcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataagctgccatcctatagcattttggagcatgtaattctttcccttcgtggctcttg 440
Query: 241 gtggagacaagtttactgggaagctttcaaaatcctatccctttcagttgcaatacagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggagacaagtttactgggaagctttcaaaatcctatccctttcagttgcaatacagtt 500
Query: 301 gagaaagccaaatataataagaatagggtagatttctgcagattgctttaatgatatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaagccaaatataataagaatagggtagatttctgcagattgctttaatgatatccc 560
Query: 361 agagaattacatagtggtggaatttgggggaaagccatcacagaaattcaccattgcaga 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagaattacatagtggcggaatttgggggaaagccatcacagaaattcaccattgcaga 620
Query: 421 gtagaccaagaaacaggtggttttcagggcatgctggagttgatctgtactggcaaatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagaccaagaaacaggtggttttcagggcatgctggagttgatctgtactggcaaatca 680
Query: 481 ttgctgaattttcaggaattttaccacaccagtaccctgaaaccagccacagtgggaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctgaattttcaggaattttaccacaccagtaccctgaaaccagccacagtgggaata 740
Query: 541 tttacaccatgggaaatcagcagattctattaaagaagatcggatttctctctattgcct 600
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 741 tttacaccatgggaaatcagcagattctattaaagaagaccggatttctctctactgcct 800
Query: 601 cagttgatttgccacatcctgctggatatatgttaaagtctcttgtatagttct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagttgatttgccacatcctgctggatatatgttaaagtctcttgtatagttct 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
