AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCGGCGGA
ATTCACTAAATATCTCCGATCTAACAAACATTATTCTAAATACACTGCAG
CAAGTATAGTAATCAAATCCCCCCTATCAAATATCTATTAAATAGATATC
CTTCTGACTGATTTCTAGATGGAAAAACTGAGACTTAGACCAGAGATGTA
GGCCCAGCTGGCAGAGTAGCAGTGTGCCTGGTTCACATGAGTGATGCTGA
TTCCAGGTCATTTGCCATCTCCTGGGTATGAAGATGGACTGGAACCTGAG
ATGACCTTTAGAAAACCGTGTCATAACTTTCATAGAGGATAGTAGGTCAT
AAAGGAGAGACTCCTCAGGTAGCCAAGAAAGTCAGTTAATCTTTCAAAAC
TACACAGAGAAAGAAGGAACGAACTTTGACAGTGAAGGGACACAGGTGAT
GTGGAAATGCTGTCAGATGTTCCTTAAGGGAAAAATAAAAAAGACTTTAT
GACTACAGTTGGCACAGCAGTTAGAAAACATGGTATCTATATTTCTTCCT
CTACCTCTTTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTTCCTCTCCCTCTCCCTCGCTCCCTCTATTGCTTTTTC
TACTATGACCTCCGTTTCTCTTTTGTTTTTTACTTTTCCCCGCTTATCCT
CGTTTTTTACCCTTTTCCCTCATCCTTTG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAATGTATTTGCACATACATCCATACT
TACTTCTAAATTTAACCTGTTGGGTCATATAACATTACTTGTCTGTATGT
TTTCAGAGAGGAACTTTTAGCAGCAGAAAACCAGTTGGTGCGCTCTTCCT
GTGGAAGACCAGCTTTTCCAATCCAAGCCTTCTCAGTTGCCTGTTACTCT
TTGTGTAGTGCTGGCACCAGATGGACTATTTCCAATCCAGTTTGGCATGT
TTGTTGGTGTTACACTTGTTCAGTCCATGATTGGGTGGCCATGTTGATTA
TACTTTGCAGGTAGCTTGTGATGTGACCAGGGAACAAAATCTCACAGCTA
ACTCTATGATCCTTTGCATCTTCAGATCATTTACCTCCTCTTCTACAATG
TTCTCTGAGCTTTAGGTGTGGGAGTGTGTCGTTAGATGTATCTGTTGCAA
TTGGCCTCTACCACTCTGCCTTTTGATTGGCTGCCGCTTTCTACAGTATT
CTCCATCTATTGCACAGAGAACTTCCCTCACTGTGCGACGAAAATTACCT
CTACCTCTGAGCATAATGCCCCATGCTTATAGATCGCTGTAAAAAACTAT
ACTGTCTTTGTAAATCACTGCCTGCCAAATCTCCCCCATTAAATGTGATT
TCCCCCCCTCTGCTTTCATTTATT

Query= MSMg01no327_p01.b1 MSMg01no327_p01.b1 CHROMAT_FILE:
MSMg01no327_p01.b1 PHD_FILE: MSMg01no327_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:56 2005
         (464 letters)



>mm_chr9_29591602_29592466
          Length = 865

 Score =  830 bits (429), Expect = 0.0
 Identities = 455/465 (97%), Gaps = 5/465 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcactaaatatctcc--gatctaacaaacattattctaaatacactgcagcaagta 60
           ||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcactaaata--tccaagatctaacaaacattattctaaatacactgcagcaagta 608

                                                                       
Query: 61  tagtaatcaaatcccccctatcaaatatctattaaatagatatccttctgactgatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tagtaatcaaatcccccctatcaaatatctattaaatagatatccttctgactgatttct 548

                                                                       
Query: 121 agatggaaaaactgagacttagaccagagatgtaggcccagctggcagagtagcagtgtg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agatggaaaaactgaggcttagaccagagatgtaggcccagctggcagagtagcagtgtg 488

                                                                       
Query: 181 cctggttcacatgagtgatgctgattccaggtcatttgccatctcctgggtatgaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctggttcacatgagtgatgctgattccaggtcatttgccatctcctgggtatgaagatg 428

                                                                       
Query: 241 gactggaacctgagatgacctttagaaaaccgtgtcataactttcatagaggatagtagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gactggaacctgagatgacctttagaaaaccgtgtcataactttcatagaggatagtagg 368

                                                                       
Query: 301 tcataaaggagagactcctcaggtagccaagaaagtcagttaatctttcaaaactacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcataaaggagagactcctcaggtagccaagaaagtcagttaatctttcaaaactacaca 308

                                                                       
Query: 361 gagaaagaaggaac-gaactttgacagtgaagggacacaggtgatgtggaaatgctgtca 419
           |||||| || |||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagaaaaaaagaaatgaactttgacagtgaagggacacaggtgatgtggaaatgctgtca 248

                                                        
Query: 420 gatgttccttaagggaaaaataaaaaagactttatgactacagtt 464
           |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 247 gatgttccttaagggaaaaataaaaaagactttatgaccacagtt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)