Query= MSMg01no329_a04.b1 MSMg01no329_a04.b1 CHROMAT_FILE:
MSMg01no329_a04.b1 PHD_FILE: MSMg01no329_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:19 2005
(572 letters)
>mm_chr9_123187008_123187978
Length = 971
Score = 982 bits (508), Expect = 0.0
Identities = 529/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagggccccagaacacagagaaggataaaaatagtcctttaaaacatggtaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaattctacagggccccagaacacagagaaggataaaaatagtcctttaaaacatggtaa 476
Query: 65 tttattgccacaacagcttctctacattgttggttaaattgccctttcaggaaccatggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttattgccacaacagcttctctacattgttggttaaattgccctttcaggaaccatggg 416
Query: 125 cagcagaactggcagaacccacacccttcacagagctggcaggggggagctgtgtggtgt 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 415 cagcagaactggcagaacccacaccc-tcacagagctggcaggggggagctgtatggtgt 357
Query: 185 gtacacacaagatcttgacagtagatctaaatcagcccttctggcctcagcccactcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 356 gtacacacaagatcttgacagtagatctaaatcagcccttctggcctcagcccacacact 297
Query: 245 tttctggaacagtctgtgcaatttcaggaaatgcctccccttgaaagcccagagcaatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttctggaacagtctgtgcaatttcaggaaatgcctccccttgaaagcccagagcaatga 237
Query: 305 actgtggttaagatgggtgaagaagctgatgggcatgggttcaaatcccatacactctgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 actgtggttaagatgggtgaagaagctgatgggcatgggttcaaatcccatacactctgc 177
Query: 365 ttactgacgctgctcctcagacaggtgactctccacgtctgtttcctgacttacaagttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttactgacgctgctcctcagacaggtgactctccacgtctgtttcctgacttacaagttg 117
Query: 425 ggaataacaacacctcctgggtagcttgtggcaaaggcattgtcacatggatgtggttga 484
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ggaataacaacagctcctgggcagcttgtggcaaaggcattgtcacatggatgtggttga 57
Query: 485 cacagcctagtccttggtaacagatgatctcctaagatggagtgaacagctccaat 540
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 56 cacagcctagtccttggtgacagatgatctcccaagatggagtgaacagctccaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space: 540082
Effective search space used: 540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_a04.g1 MSMg01no329_a04.g1 CHROMAT_FILE:
MSMg01no329_a04.g1 PHD_FILE: MSMg01no329_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:19 2005
(137 letters)
>mm_chr9_122983314_122983850
Length = 537
Score = 238 bits (123), Expect = 1e-67
Identities = 132/135 (97%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 1 caggtgtcctttattcc-caagagagttaatggcgcctttcccctagagggtttctagca 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgtcctttattccacaagagagttaatggcgcctttcccctagagggtttctagca 260
Query: 60 tgccatcttagaagtaccagtcatcgttcctttgttttatatttgtccgtgggagggtag 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 261 tgccatcttagaagtaccagtcatcgttcctttgtttt-tatttgtccgtgggagcgtag 319
Query: 120 aggagggagaaggga 134
|||||||||||||||
Sbjct: 320 aggagggagaaggga 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space: 68241
Effective search space used: 68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
