BAC Information

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BAC

Clone NameMSMg01-331D09
Chromosome9 (Build37)
Map Location 107,197,812 - 107,198,356
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3
Downstream geneCish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D09.T7 (MSMg01no331_d09.b1)MSMg01-331D09.TJ (MSMg01no331_d09.g1)
ACCAG447568AG447569
length727728
length of high quality
(start - end)		683 (45 - 727)545 (75 - 619)
definitionCHROMAT_FILE: MSMg01no331_d09.b1 PHD_FILE: MSMg01no331_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:05 2005CHROMAT_FILE: MSMg01no331_d09.g1 PHD_FILE: MSMg01no331_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGACCGCGGAA
TTCTCACCTGTGGCATACCGAATGGCAGAGAAGCACCTGAAAAAATATTC
AACATCCTTAATCATCAGGGAAATGCGAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGAGGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAG
GATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAA
AATGAAGACTGAAGTGTGGACACTATG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGACTACCTTGGAGCTCAGTTTGTAG
ACCAGGCTGGCCCCAAACTTCTGAGTACAGGTTTACAATGTGAACTTATA
GGCTAAGTCACCATATCTGGTTTACCAAGGAGCTGTAGGGTCTATGTGAT
CTCCCTCCACATCCACGGTTCAGGATATGGGGAGATAAGATCTGGAGAAC
CAGTACACCCACTCCTTCCACACACGTCACACCACCCACGTTCCTCAGAA
AGGGTAGCTATAAGATTCTTGGCTGCGATGACAGGCTTCTGGCAGTGTCT
AGAATCTGAGTATAGTGACTGGGCTTTCCCCAGCCCAGGCTAGGCTCTGG
GTGCCCCACCCAAGATACACAGCTAAAGATAAAACCCTGTGAAAAGGAAG
GAGTTCTTAGGGAAGATAAGAGATTACTCCAAGGGACTCAGTTCCCCGTA
GGTGCCCTGGAGGGGAAGTTAAGTGTAACCCAAGCAGGGCTCCCAGAATA
CAGCAAGAAGCCAGTTTCTTGGAATATGGGTAGGATGGAGTAGGAGTACT
CTGATAATATGGGATCCCTGTATGTATGCATACTAACTCTTCAGCATATA
CTGTCTGTTGCCGCTTTGCTATTAAGATACGTGTGATTTCTCAGGTGTCA
TGCCTTAGAGCCTTGTTTTTCTTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d09.g1 MSMg01no331_d09.g1 CHROMAT_FILE:
MSMg01no331_d09.g1 PHD_FILE: MSMg01no331_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:05 2005
         (545 letters)



>mm_chr9_107197567_107198511
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactaccttggagctcagtttgtagaccaggctggccccaaacttctgagtacaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 agactaccttggagctcagtttgtagaccaggctggccccaaacttctgagtacaggttt 731

                                                                       
Query: 61  acaatgtgaacttataggctaagtcaccatatctggtttaccaaggagctgtagggtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acaatgtgaacttataggctaagtcaccatatctggtttaccaaggagctgtagggtcta 671

                                                                       
Query: 121 tgtgatctccctccacatccacggttcaggatatggggagataagatctggagaaccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgtgatctccctccacatccacggttcaggatatggggagataagatctggagaaccagt 611

                                                                       
Query: 181 acacccactccttccacacacgtcacaccacccacgttcctcagaaagggtagctataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acacccactccttccacacacgtcacaccacccacgttcctcagaaagggtagctataag 551

                                                                       
Query: 241 attcttggctgcgatgacaggcttctggcagtgtctagaatctgagtatagtgactgggc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 attcttggcagcgatgacaggcttctggcagtgtctagaatctgagtatagtgactgggc 491

                                                                       
Query: 301 tttccccagcccaggctaggctctgggtgccccacccaagatacacagctaaagataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 490 tttccccagcccaggctaggctctgggtgccccacccaagatagagagctaaagataaaa 431

                                                                       
Query: 361 ccctgtgaaaaggaaggagttcttagggaagataagagattactccaagggactcagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccctgtgaaaaggaaggagttcttagggaagataagagattactccaagggactcagttc 371

                                                                       
Query: 421 cccgtaggtgccctggaggggaagttaagtgtaacccaagcagggctcccagaatacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cccgtaggtgccctggaggggaagttaagtgtaacccaagcagggctcccagaatacagc 311

                                                                       
Query: 481 aagaagccagtttcttggaatatgggtaggatggagtaggagtactctgataatatggga 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 310 aagaagccagtttcttggaatatgggtaggatggagtaggagtactctgagaacatggga 251

                
Query: 541 tccct 545
           |||||
Sbjct: 250 tccct 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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