BAC Information

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BAC

Clone NameMSMg01-331F02
Chromosome9 (Build37)
Map Location 13,516,374 - 13,516,812
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
Downstream geneMtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331F02.T7 (MSMg01no331_f02.b1)MSMg01-331F02.TJ (MSMg01no331_f02.g1)
ACCAG447643AG447644
length749748
length of high quality
(start - end)
495 (71 - 565)440 (70 - 509)
definitionCHROMAT_FILE: MSMg01no331_f02.b1 PHD_FILE: MSMg01no331_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:12 2005CHROMAT_FILE: MSMg01no331_f02.g1 PHD_FILE: MSMg01no331_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAAGTGCGCGGA
ATTCCAATGGAGTTACGAATACACCAACCTATCCACAAAACCTTTGACTC
GCAATTTGTCCTGCCCACAAGATGTCAGGGATAAGGATGGAGCAGAAATT
GAGAGAATGGCCAGGCAGTTACAGGTCCAGGTCACTGGGCTGGGAAAATG
GTTCAGTCAGGAAAATGCTTGTTTTGCAAGCACAAGGCCCTAAGCCCATC
CCAGAACGTACATTTTATAAAACACTCAGACTGGCACCCTGGAGCTAAGG
CTGCCACACAGCCCTCTGCAGGCAAGTCTCCACCAGGAGAGAGGGGGCTC
ACTCTTAAGCTCAGAGTTGAGATCACCACTTTCTCTCCAATAACTGTCTA
AAGCAGGGCCTGCCAGGAGTGCCAGGGCACAGGAACAGCAGAGCAGCTGA
GGACAGGATCCTCCTGGTCACCATCTGCATCCAGGAGCTAAGGTTGCTCC
ACAACCCTCCACATACAAACCCCTCTCAAGAGAGAGCTGATCTCTGCAGG
AGTGCTGACATACCTAAAATCTCAGACTTACGGGCCCATAGCACGGAAAA
GCTCCAGTCAGAGACAGCAAGACCATCTAACACCAGAGATAATCAGATGG
CGAGAGGGAAGCATAAGAACATTACCAACAGAAACCAGGGCTACTTGGCA
TCATCAGAACCCAGTTCTCTCACCAGAGGAAGCCCTGGATACGTCAAAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCTGTTCCATTATGATGAGGTTTTCCA
GTGCTAGGGATTGAACCTGGAGCCTTGTGCATGAAAAACAAAGACTTTAC
TAATTGAGCTACTTTCCTAGTCTTTTGGAGGTTGATTTAAAAAAAAAATC
TTTTAAGTATGAATATTAAGTTCCTCAGTAGAGCGTATAGGTCTGATCAC
CTATAGGATCAGTCTGATTCAAAGCAGCGATACACGTAACACCCTGTACT
GTGAGAATTAAGAAATCACATTGATTTTGAAACTAAATGCTGCCATCCCT
GGTCTGCATGCAGTCATGACAGAGGACTTTCATTTACACAAATAGTATTT
TAAGTTTCCCCCTTGACAAACTTAAGTAGTTTTAGTACCAAGATGTGGTG
TCAATACACAGATGTGGTTTACAGGGGTTACAATTCTTTCGTAGAAGGAA
GAAAGGAGGGGCTGGCGAAGTGGCTCAGTGGTTAAGAGCGCCAGCTGCTC
TTCTGAAGGTCCTGAGTTCCAATGCCAGCAACCACATGGTGGTGCACAAC
CATGGGTAACAAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTA
CAGCGGACTTACATATAGTAAATAAATAAATCTTGAGAAAAAAAGACCGA
AAAAAGGATTGAAGGTATTATATGAACAATTTTATCTGAACCTTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_f02.g1 MSMg01no331_f02.g1 CHROMAT_FILE:
MSMg01no331_f02.g1 PHD_FILE: MSMg01no331_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:12 2005
         (440 letters)



>mm_chr9_13516174_13517013
          Length = 840

 Score =  766 bits (396), Expect = 0.0
 Identities = 429/440 (97%), Gaps = 2/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcctgttccattatgatgaggttttccagtgctagggattgaacctggagccttgtg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcatgttccattatgatgaggttttccagtgctagggattgaacctggagccttgtg 260

                                                                       
Query: 61  catgaaaaacaaagactttactaattgagctactttcctagtcttttggaggttgattt- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 catgaaaaacaaagactttactaattgagctactttcctagtcttttggaggttgattta 320

                                                                       
Query: 120 aaaaaaaaaatcttttaagtatgaatattaagttcctcagtagagcgtataggtctgatc 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaaatcttttaagtatgaatactaagttcctcagtagagcgtataggtctgatc 380

                                                                       
Query: 180 acctataggatcagtctgattcaaagcagcgatacacgtaacaccctgtactgtgagaat 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acctataggatcagtctgattcaaagcagcgatacatgtaacaccctgtactgtgagaat 440

                                                                       
Query: 240 taagaaatcacattgattttgaaactaaatgctgccatccctggtctgcatgcagtcatg 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaaatcacattgactttgaaactaaatgctgccatccctggtctgcatgcagtcatg 500

                                                                       
Query: 300 acagaggactttcatttacacaaatagtattttaagtttcccccttgacaaacttaagta 359
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaggactttcatttatacaaatagtattttaagtttcccccttgacaaacttaagta 560

                                                                       
Query: 360 gttttagtaccaagatgtggtgtcaatacacagatgtggtttacaggggttacaattctt 419
            |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 561 cttttagtaccaagatgtg-tgtcaatacacagatgtagtttacagtggttacaattctt 619

                               
Query: 420 tcgtagaaggaagaaaggag 439
           || |||||||||||||||||
Sbjct: 620 tcatagaaggaagaaaggag 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)