BAC Information

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BAC

Clone NameMSMg01-331J12
Chromosome9 (Build37)
Map Location 123,951,491 - 123,951,692
singlet/doubletsinglet
Overlap genenone
Upstream geneTgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
Downstream geneCcr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331J12.T7 (MSMg01no331_j12.b1)MSMg01-331J12.TJ (MSMg01no331_j12.g1)
ACCAG447851AG447852
length817773
length of high quality
(start - end)
60 (71 - 130)205 (72 - 276)
definitionCHROMAT_FILE: MSMg01no331_j12.b1 PHD_FILE: MSMg01no331_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:31 2005CHROMAT_FILE: MSMg01no331_j12.g1 PHD_FILE: MSMg01no331_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGAGGGGCCGCGGAAT
TCTGGGATCTCAATGAAGGGTACATAAATTTGAGGATTGACAGGCAGGGT
GGAGGGTTGTTGGGGGTTTTAGGAAGGTCGGTTGTAGCTTGTTAGTAGCT
GTGGTCAAAGAAGAAATAAAAGGAAATGTTGGGAGCCATCTGCTATTTCT
AAAAGCAGAGCAAAAGTTTGCCCCTGCTTCTCTGAAGCATAGAAGTGTGG
GTGGCGCGCGAGTTAGAGCCACAAAGGTAGAGAGACAGAATGATGATACC
TGCCTGCCAGGTTTATTTTTCAAGACATTGTTGATATATTTCCCTTTCTG
TTGATACTTCTAACTTTATCATCATTCACACCTGATCTCCCCCTTCCTTG
CTCCTTCTTATTTTCTCCCCCATATTAAGACCCCTTAATCACAATAATCA
TCTTTGTTATCTCCCCTATTCTCTTTAAAAATTTTGCTGGAAAATAATTG
TTTATAGCTAATACAACACCTGCCTTATAATCCACATATATCTTTATTTT
ATATCTAGCACTTTAAATCCCACTTCGTCTGTCACCACTTATTTATTTAA
TATATTTCTCATCTCCTTTTTTTTTTATTCAACACCTCCACCGTCACACC
AATTACTTCGATCATCTTATTTTTCATATACTCCATACTTATATTCTCAT
ATCCTCGTCTATTTTTATTCCCCTCCTCATTTCACATGTCTCCTTTTCTT
TACCCCCCTCCCCTCACCTACCACTGCTTCTTTATTTTAGGCTACACTTG
TTTGTCCGCACTAGTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAATCAGGGCCTTGTACATGCTAGGCAATTTTT
CTATTATCAGGCTACATCCACAGCGCTGGAGAGCACGTTGCTGTCTTGTG
ACAGGACTAAGATATTACTAGATGACTTGCTCCATTCTGGTCTGCAGGGA
CTTCACTATCACAACTTCTAGTGGGATACTGCCATGGGTCATACTGTCAT
CAGAACTGTACTGACTGAATTTGGGTAGTAGGAGTAACAAAAATCCTGAA
TGTGGTGATACATATCTGACAATGACAAATAAACCCAGAGGAAATACCAG
CCTCCTGTTTTAGGGAAGAGCATAAAGCTTGATGATCTAGGGTCTTAGAA
GACAATCTCTTCAAACCTAAGGACTGGAGGAGGTGGAGATGGGATAGTAT
AGGTAACCTATGGTTGCATAACAATGTGTACGCTAACTAGCTTAAAACAA
CTGCACTTATTTGATTTCCTTTCCATTTTTGAGGGCTGCACCAGATAAGG
ACCATGAATGACAATCCATTAAAGGCGCACCCACACTCATATCTTGCTTC
TTTGTGTTAAGCACACATCGATTCTTATCTCCAAGGCTGACTCTTCTTTG
CGAGTTTGTAGACGCCACGATCTATGCCCACCATGATTCTTTCTGTTTTG
ACTGCTTTCGCCCTCGGCTGTCTCTCTTTCAGTTTTCACGGAAATTTAAT
TCTTGGGGGGGCCCCATCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_j12.g1 MSMg01no331_j12.g1 CHROMAT_FILE:
MSMg01no331_j12.g1 PHD_FILE: MSMg01no331_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:31 2005
         (205 letters)



>mm_chr9_123951291_123951895
          Length = 605

 Score =  344 bits (178), Expect = 2e-99
 Identities = 196/202 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggccttgtacatgctaggcaatttttctattatcaggctacatccacagcgctggag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggccttgtacatgctatgcaatttttctattatcaggctacatccacagcgctggag 260

                                                                       
Query: 61  agcacgttgctgtcttgtgacaggactaagatattactagatgacttgctccattctggt 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agcatgttgctgtcttgtgacaggactaagatattactagatgacttgctccgttctggt 320

                                                                       
Query: 121 ctgcagggacttcactatcacaacttctagtgggatactgccatgggtcatactgtcatc 180
           |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 321 ctgcagggacctcactatcacaacttctactgggatactgcaatgggtcatactgtcatc 380

                                 
Query: 181 agaactgtactgactgaatttg 202
           ||||||||||||||||||||||
Sbjct: 381 agaactgtactgactgaatttg 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)