Query= MSMg01no331_m08.b1 MSMg01no331_m08.b1 CHROMAT_FILE:
MSMg01no331_m08.b1 PHD_FILE: MSMg01no331_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:43 2005
(554 letters)
>mm_chr9_26601183_26602135
Length = 953
Score = 949 bits (491), Expect = 0.0
Identities = 535/552 (96%), Gaps = 5/552 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgctatg--cccgagctttggccatgtccctcttaccccatgtttcctgatt 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattctctgctatgtt---gaactttggccatgtccctcttaccccatgtttcctgatt 697
Query: 63 gagagaggaaggagcagggaggaacagggaagatttgatatcaaaatgcctgtcgttcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gagagaggaaggagcagggaggaacagggaagatttgatatcaaaatgcctgtcgttcct 637
Query: 123 cccatatttaatcttattctagatagtcagggctgacatttttttctcttcttagggcct 182
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 636 cccatatttaatcttattctagattctcagggctgacatttttttctcttcttagggcct 577
Query: 183 ttatccagctggctgcaaagatcgggctgtgggtgattctgcgaccagggccctacatct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttatccagctggctgcaaagatcgggctgtgggtgattctgcgaccagggccctacatct 517
Query: 243 gtagtgagattgacctcgggggcttgcccaggtgagagatggcagtgtgggtctccagag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtagtgagattgacctcgggggcttgcccaggtgagagatggcagtgtgggtctccagag 457
Query: 303 tagctggaagtgtctgggcgcttagaggtgttgacttagtttttttttttttaagggagt 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 tagctggaagtgtctgggcgcttagaggtgttgacttagtttttttttttttaaggtagt 397
Query: 363 tttcgttctgcgccnaattgtctctttgaagcaaggggcattggcataatgctgccatcc 422
||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttttgttctgtgcagaattgtctctttgaagcaaggggcattggcataatgctgccatcc 337
Query: 423 ctgctgttgttgagtaacctcaggtccttctatgtgtcaggtggtagcagtcggaggtta 482
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 336 ctgctgttgttgagtaacctcaggtccttctatgtgtcaggtgacagcagtcggaggtta 277
Query: 483 tctgcctggaggcatttcattgttctggccacactggagaggcacccagttaggttactt 542
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 276 tctgcctggaggcatttcattgttctggccacactggagaggcacccaggcaggttactt 217
Query: 543 atctgatctgtc 554
||||||||||||
Sbjct: 216 atctgatctgtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_m08.g1 MSMg01no331_m08.g1 CHROMAT_FILE:
MSMg01no331_m08.g1 PHD_FILE: MSMg01no331_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:43 2005
(317 letters)
>mm_chr9_26434793_26435509
Length = 717
Score = 555 bits (287), Expect = e-162
Identities = 310/319 (97%), Gaps = 4/319 (1%)
Strand = Plus / Plus
Query: 1 tgacaagccagtctcagaaagg--gaatgttcactcctttgccccccacctgagcccgac 58
|||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 201 tgacaagctagtctcagaaaggctg--tgttcactcctttgccccccagctgagcccgac 258
Query: 59 tctccagcctgaagcagaacatcccatattgcgcctgcctgctgtagacactgtgaataa 118
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 259 tctccagcctgaagcagaacatcccatattgtgcctgcctgctgtagacactgtgaataa 318
Query: 119 tggagtgccatgtttgtctaatggatttatcactacttacgaatgcagcttcatcaacaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggagtgccatgtttgtctaatggatttatcactacttacgaatgcagcttcatcaacaa 378
Query: 179 tagcaggtggaaatcgatgtcaaggcagctaagtgagctgcatactcccactcagcttgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagcaggtggaaatcgatgtcaaggcagctaagtgagctgcatactcccactcagcttgg 438
Query: 239 catatattgatggtcttttgtccacttggcattttgaacccaaggtggatctgaaaatag 298
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 439 catatattgatggtcttttgtccacttggtattttgaacccaatgtggatctgaaaatag 498
Query: 299 aaataaaaattcccctggt 317
|||||||||||||||||||
Sbjct: 499 aaataaaaattcccctggt 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
