Query= MSMg01no331_n02.b1 MSMg01no331_n02.b1 CHROMAT_FILE:
MSMg01no331_n02.b1 PHD_FILE: MSMg01no331_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:47 2005
(629 letters)
>mm_chr9_91304098_91305126
Length = 1029
Score = 1120 bits (579), Expect = 0.0
Identities = 616/634 (97%), Gaps = 9/634 (1%)
Strand = Plus / Plus
Query: 5 gaattctttacacttcccattttcattcacagaccctgaccaaatctactgtgataccag 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattctttacacttcagattttcattcacagaccctgaccaaatctactgtgataccag 255
Query: 65 tattgtattctccatccgctcccaattattcctggcagagaatttggagccggg------ 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tattgtattctccatccgctcccaattattcctggcagagaatttggagccgggaccatg 315
Query: 119 ---tcggctagggatgaactctggagtgcactggagatttgagattttaatgtgtaggaa 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgtcggctagggatgaactctggagtgcactggagatttgagattttaatgtgtaggaa 375
Query: 176 ttgatctcaaaccgcagttttataaaaacccaggctcagagatgttggggcgggagatgg 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 376 ttgatctcaaaccgcagttttataaaaatccaggctcagagatgttggggcgggagatgg 435
Query: 236 gggcgggaggaaggctctgctttcagactattttgtataaaagtcgtgaattcagaatta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggcgggaggaaggctctgctttcagactattttgtataaaagtcgtgaattcagaatta 495
Query: 296 gagggggaaggagagcaggtaggtgttagaggaagtgcaggggcagctccctcccctggt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagggggaaggagagcaggtaggtgttagaggaagtgcaggggcagctccctcccctggt 555
Query: 356 tagaggtgtggcatccctttggcttctgacagttcaggagccccttagtttgtcaacaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagaggtgtggcatccctttggcttctgacagttcaggagccccttagtttgtcaacaga 615
Query: 416 gggactgccagtagcacttgggctaatctgtcgctagggaaagcctgtttctgcagggag 475
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 ggaactgccagtagcacttgggctaatctgtcgctagggaaagactgtttctgcagggag 675
Query: 476 ggtctgagctctttgtctgttgtatctagaggtatgctgggacagagaaaaggagcccta 535
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 ggtctgagctctttgtctgttttatctagaggtatgctgggactgagaaaaggagcccta 735
Query: 536 accaatttcctagtctactgatatgtagctcttgaaggtcagacccctccctagntcatc 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 736 accaatttcctagtctactgatatgtagctcttgaaggtcagacccctccctagttcatc 795
Query: 596 tgtttctcaactttctgcaggcttccttcctcca 629
||||||||||||||||||||||| ||||||||||
Sbjct: 796 tgtttctcaactttctgcaggctcccttcctcca 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_n02.g1 MSMg01no331_n02.g1 CHROMAT_FILE:
MSMg01no331_n02.g1 PHD_FILE: MSMg01no331_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:47 2005
(606 letters)
>mm_chr9_91475118_91476121
Length = 1004
Score = 1123 bits (581), Expect = 0.0
Identities = 599/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 1 ttctttgaggctttatatttttgaaattccattataaaagaattgttacaaattgagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttctttgaggctttatatttttgaaattccattataaaagaattgttacaaattgagaaa 744
Query: 61 atgtaaatttctgaacatttttatgaaattcttctatgagtgtacatttcatgttacata 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 743 atgtaaatttctgaacatttttatgaaattcttctatgagtgtgcatttcatgttacata 684
Query: 121 ttagtaagaatatataaaggagtgtgcttgtttattcaacttgaatgccaggagtgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttagtaagaatatataaaggagtgtgcttgtttattcaacttgaatgccaggagtgtgga 624
Query: 181 aaattatttttgtgaagcatttcgagcaacttagaaagtaaatgtaattggatccaacaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 aaattatttttgtgaagcatttcgagcaacttagaaagtaaatgtaattggacccaacaa 564
Query: 241 gaagtattatctatggatcaataaaaatccctgatcacaaaaactctccaaaacagacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaagtattatctatggatcaataaaaatccctgatcacaaaaactctccaaaacagacct 504
Query: 301 acatgtgagaaatagaaaaaaaaatctcttttggattgctatttataatatcaagtgatt 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acatgtgagaaatag-aaaaaaaatctcttttggattgctatttataatatcaagtgatt 445
Query: 361 tcaaaacttgtatgttaaaatttcaaaatattactccatagctcctttgactttcaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaaacttgtatgttaaaatttcaaaatattactccatagctcctttgactttcaagag 385
Query: 421 ctacagcttaaacattaattgatactaatctaagttgagaaggagcgtatgtattacact 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 ctacagcttaaacattaattgatactaatctaagttgagaaggagc-tatgtattacact 326
Query: 481 tttatgatgtgtagaagatgggtctcattcaatgggttttgacatttgataattacttct 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 tttatgatgtgtagaagatgggtctcattcaatggcttttgacatttgataattacttct 266
Query: 541 tcacttaagattacatctttctcccaagatctttttaatgttatttggttatagtcacat 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tcacttaagattacatctttctcccaagatctttttaatgttatttgcttatagtcacat 206
Query: 601 gatag 605
|||||
Sbjct: 205 gatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
