Query= MSMg01no333_e15.b1 MSMg01no333_e15.b1 CHROMAT_FILE:
MSMg01no333_e15.b1 PHD_FILE: MSMg01no333_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:26 2005
(672 letters)
>mm_chr9_78434638_78435703
Length = 1066
Score = 1216 bits (629), Expect = 0.0
Identities = 658/675 (97%), Gaps = 13/675 (1%)
Strand = Plus / Plus
Query: 5 gaattctttggtaatgtcaacaaaaggcatacccacagaagactgttccgggccaacaaa 64
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 198 gaattctttggtaatgtcaacaaaagacataccgacagaagactgttccgggccaacaaa 257
Query: 65 ggcaaatttccagttcaattctttctcacacctatatccttgaatgtgtccaagccgatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcaaatttccagttcaattctttctcacacctatatccttgaatgtgtccaagccgatt 317
Query: 125 tgtcctttagttttctgtagcttcaggaagctacattacaaaagtgtagcgaaatccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtcctttagttttctgtagcttcaggaagctacattacaaaagtgtagcgaaatccagt 377
Query: 185 gaagacacatacttgtgttttgggggatggtgggtatggagactagaaccttgtcaggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagacacatacttgtgttttgggggatggtgggtatggagactagaaccttgtcaggca 437
Query: 245 aggactataccgctgtgcaacatgcgccccccccccc-------gcaatgaagatgcttt 297
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 aggactatacctctgtgcaacatgcgccccccccccccccccccgcaatgaagatgcttt 497
Query: 298 ttgaagtagcacctgcaagacctctagtacggcatattgtcttagagtgctaaagatatc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgaagtagcacctgcaagacctctagtacggcatattgtcttagagtgctaaagatatc 557
Query: 358 ttatcttgagaataacctgtttcctaacttaaattgcagtctgatagacaaggaaaaaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttatcttgagaataacctgtttcctaacttaaattgcagtctgatagacaaggaaaaaat 617
Query: 418 agaaatgtctgcaatattttggtgtcttacagcacaaagtcaagatattcgcgggattat 477
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 618 agaaatgtctgcaatattttggtgtcttacagcacaa------gatattcgcgggattat 671
Query: 478 gcaactgtcccccgcacactcaacagctgttaactcttctttgttgttgttttgtttttg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcaactgtcccccgcacactcaacagctgttaactcttctttgttgttgttttgtttttg 731
Query: 538 tctctcctccccaacaaggcgctaccagatcacatgtttacaggccggcataagcggaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tctctcctccccaacaaggcgctaccagatcacatgtttacaggccggcataagcggaaa 791
Query: 598 cctggcggccgctggaggggagcaagaagcactttggcccctttgcttattgactcggat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cctggcggccgctggaggggagcaagaagcactttggcccctttgcttattgactcggat 851
Query: 658 cggatacccctccga 672
||| |||||||||||
Sbjct: 852 cgggtacccctccga 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1066
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1056
Effective search space: 699072
Effective search space used: 699072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_e15.g1 MSMg01no333_e15.g1 CHROMAT_FILE:
MSMg01no333_e15.g1 PHD_FILE: MSMg01no333_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:26 2005
(664 letters)
>mm_chr9_78461910_78462973
Length = 1064
Score = 1268 bits (656), Expect = 0.0
Identities = 662/664 (99%)
Strand = Plus / Minus
Query: 1 tgtcagaacatagggtcccgagagaagtgtggcgctgggaatgaaggtgaccagcgttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgtcagaacatagggtcccgagagaagtgtggcgctgggaatgaaggtgaccagcgttcg 805
Query: 61 ttggtgcccagcaattactgatcactgcttttctgaacccaggttttctgaagctgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttggtgcccagcaattactgatcactgcttttctgaacccaggttttctgaagctgcctc 745
Query: 121 ccccacaccctacttggcaccacccctgtcttcagatgactcggtttcaccatgactacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccccacaccctacttggcaccacccctgtcttcagatgactcggtttcaccatgactacc 685
Query: 181 ccataaaagccgggaactgccaaagacttggaaaataggcacattcagtccctgaggact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccataaaagccgggaactgccaaagacttggaaaataggcacattcagtccctgaggact 625
Query: 241 taaactttctcatttccaaaaggtattttagataatgacggtctggtttggaacgaaacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaactttctcatttccaaaaggtattttagataatgacggtctggtttggaacgaaacg 565
Query: 301 caactagagaaacgttgaatgttttaactgtctgctaaatggagggaggcggcacctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 caactagagaaacgttgaatgttttaactgtctgctaaatggagggaggtggcacctgga 505
Query: 361 ccgagtgtgggtttgggagcacagaaattgctttcctcccttcctgtcccggccttggtc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaagtgtgggtttgggagcacagaaattgctttcctcccttcctgtcccggccttggtc 445
Query: 421 accctgctgaacgtctgaagatatcccttgtgtcctgttctaagggcagcctattgttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accctgctgaacgtctgaagatatcccttgtgtcctgttctaagggcagcctattgttag 385
Query: 481 tggtcatcatcctgtgcaagtgggactagggtatggtgagaagtgtctgaatgtgccacg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtcatcatcctgtgcaagtgggactagggtatggtgagaagtgtctgaatgtgccacg 325
Query: 541 gggtgcagctggctcttggcacagctgctagactgatctcctcagctccctgatacaggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtgcagctggctcttggcacagctgctagactgatctcctcagctccctgatacaggg 265
Query: 601 aggaggagcaggttcgagtgtgggcaatgagccaagttctaaatctgtgtttgtcacact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaggagcaggttcgagtgtgggcaatgagccaagttctaaatctgtgtttgtcacact 205
Query: 661 ctac 664
||||
Sbjct: 204 ctac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
