Query= MSMg01no334_n12.b1 MSMg01no334_n12.b1 CHROMAT_FILE:
MSMg01no334_n12.b1 PHD_FILE: MSMg01no334_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:24 2005
(520 letters)
>mm_chr9_64838754_64839673
Length = 920
Score = 936 bits (484), Expect = 0.0
Identities = 510/520 (98%), Gaps = 3/520 (0%)
Strand = Plus / Plus
Query: 1 ctcacacaccaggctgtgaagtctatgggcaggctcagtgtattcttcacggaaccctct 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcacacaccaggctgtgaagtctatgggcaggctcagtgtattcttcaaggaaccctct 260
Query: 61 ttgttcagctccgtgctggatgcttagaacatagctttattcctagctctcatctatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcagctccgtgctggatgcttagaacatagctttattcctagctctcatctatgtt 320
Query: 121 cctagtagggagaaatgcctagctgcctctggataaatgagtaattctataaaattatac 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagtagggagagatgcctagctgcctctggataaatgagtaattctataaaattatac 380
Query: 181 aaaaagcctctaatctagaatcagaaatgctcaggcttaaagagacatcacactgggcat 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagcctctaatctcgaatcagaaatgctcaggcttaaagagacatcacactgggcat 440
Query: 241 ggtattttttgtctttaagtctcatcgcagaagaagaagagacagtaagatctctgagag 300
|||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ggtagtgcatgtctttaagtctcatcgcagaagaaga---gacagtaagatctctgagag 497
Query: 301 ttcaagggcagccaaggctacatagtgagacctttcttcaaaagtgaaaaagaaaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttcaagggcagccaaggctacatagtgagacctttcttcaaaagtgaaaaagaaaatttt 557
Query: 361 ttaaaaatcacaagaaattaatttcttcccaaaatgttatcatcaaagaccttgaatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaaaaatcacaagaaattaatttcttcccaaaatgttatcatcaaagaccttgaatctg 617
Query: 421 tttcaaatctttgtatccatggtgccagggggttcagatccaggcacaataagacatggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttcaaatctttgtatccatggtgccagggggttcagatccaggcacaataagacatggt 677
Query: 481 gcaggcaccactgcctcttcccactgtgccaggaaccctg 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaggcaccactgcctcttcccactgtgccaggaaccctg 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_n12.g1 MSMg01no334_n12.g1 CHROMAT_FILE:
MSMg01no334_n12.g1 PHD_FILE: MSMg01no334_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:24 2005
(244 letters)
>mm_chr9_65009265_65009908
Length = 644
Score = 447 bits (231), Expect = e-130
Identities = 240/243 (98%)
Strand = Plus / Minus
Query: 2 tctccctgcatatgcagaattttctaatgctcctgtcattgcaacatccaaggctctttg 61
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 329 tctccctgcatatgcagaattttctaatgctcctgtcattgcaacatcgaaggctctttg 270
Query: 62 ctggcagccacagccaaccccttaattggagtaaccatctactttgagaaatagcattca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctggcagccacagccaaccccttaattggagtaaccatctactttgagaaatagcattca 210
Query: 122 agaacagagggcttgggatgtagctcagataatagcacgcacacacaaagccccaaggtc 181
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 209 agaacagagggcttaggatgtagctcagataatagcacgctcacacaaagccccaaggtc 150
Query: 182 aaaccccaggactgcataagcctagcacccaggaggtaggaggatcagaagtcgaaggtt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaaccccaggactgcataagcctagcacccaggaggtaggaggatcagaagtcgaaggtt 90
Query: 242 att 244
|||
Sbjct: 89 att 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
