Query= MSMg01no334_o12.b1 MSMg01no334_o12.b1 CHROMAT_FILE:
MSMg01no334_o12.b1 PHD_FILE: MSMg01no334_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:29 2005
(191 letters)
>mm_chr9_23713836_23714426
Length = 591
Score = 354 bits (183), Expect = e-102
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 1 agttgtttattgtcagaagatgatggggctactgcttagcatcctcaaaactagtctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgtttattgtcagaagatgatggggctactgcttagcatcctcaaaactagtctaac 260
Query: 61 agaggaaaatgatacctctgtattagaagttctcatattctagagaagaaacaatagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaaaatgatacctctgtattagaagttctcatattctagagaagaaacaatagtaa 320
Query: 121 atgatatttatgggtgagaaaaacattattgataccattagattttagcttctttgtttt 180
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagaattatgggtgagaaaaacattattgataccattagattttagcttctttgtttt 380
Query: 181 ggtttggtttt 191
|||||||||||
Sbjct: 381 ggtttggtttt 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space: 106689
Effective search space used: 106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no334_o12.g1 MSMg01no334_o12.g1 CHROMAT_FILE:
MSMg01no334_o12.g1 PHD_FILE: MSMg01no334_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:29 2005
(316 letters)
>mm_chr9_23860365_23861080
Length = 716
Score = 511 bits (264), Expect = e-149
Identities = 296/316 (93%), Gaps = 16/316 (5%)
Strand = Plus / Minus
Query: 1 ctttcctatggccatagattgcctttattatttttaactctaaagttccacacctttgct 60
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctttcctatggctatagattacctttattatttttaactctaaagttccacacctttgct 283
Query: 61 cctattgagatggcaattgtttgataggtacagctcaattatctcatggaatgttctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cctattgagatggcaattgtttgataggtacagctcaattatctcatggaatgttctcca 223
Query: 121 taattctatatttgtctgataatatttatttatttatttatttatttatttatttattta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 222 taattctatatttgtctgataatatttatttatttatttatttatttatttatt-a---- 168
Query: 181 tttatttatttatttattatttgctttaagctccagattttattcccttctgggtccacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 -----------atttattatttgctttaagctccagattttattcccttctgggtccacc 119
Query: 241 ctctgactgttccacatctcatacctcttcctctcaacccctgtctacagtaggatgttc 300
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 118 ctctgactgttccacatctcatacctcttcccctcgacccctgtctacagtaggatgttc 59
Query: 301 caccttctgtccccca 316
||||||||||||||||
Sbjct: 58 caccttctgtccccca 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
