Query= MSMg01no334_p14.b1 MSMg01no334_p14.b1 CHROMAT_FILE:
MSMg01no334_p14.b1 PHD_FILE: MSMg01no334_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:34 2005
(580 letters)
>mm_chr9_71187175_71188156
Length = 982
Score = 977 bits (505), Expect = 0.0
Identities = 558/583 (95%), Gaps = 16/583 (2%)
Strand = Plus / Minus
Query: 3 ggaattcctcattttgactacctaccatgctagcagattgggtttatagtcacttggcta 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 849 ggaattcctcattttgattacctaccatgctagcagattgggtttatagtcactt-gcta 791
Query: 63 cgcagacttgggcaggacatcatgataggaaaggaaactgtacatcttagagtggacaag 122
||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 790 ----------ggcagaacatcacgataggaaaggaaactgtacatcttagagtggacaag 741
Query: 123 aagtagagcagaagggcctgagagccaggcgtaactagggataca---cttctggtcaga 179
|||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 740 aagtagagcagaagggcctgagagccaggcataaccagggatacacttcttctggtcaga 681
Query: 180 ctccactggcctaaagtttccagaactttccaccagctggagactgagtgttaaacttat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctccactggcctaaagtttccagaactttccaccagctggagactgagtgttaaacttat 621
Query: 240 gagaatgggggaaagctgctccagaggaagtccttcgtacagtttgactattagctacag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagaatgggggaaagctgctccagaggaagtccttcgtacagtttgactattagctacag 561
Query: 300 tgtgcttgcggggaatataggtgtaaatatggttattttgactgatttttatacatttaa 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgcttgcggggaatataggtgaaaatatggttattttgactgatttttatacatttaa 501
Query: 360 aatcaatttaacactataaaatgtac-gttttttt-aaaatagaggttgtttttaattta 417
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 500 aatcaatttaacactataaaatgtacagttttttttaaaatagaggttgtttttaattta 441
Query: 418 atttaaaatattttatttctctctctatgtgttttgctcggtaccatgtgtgtgcagtgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttaaaatattttatttctctctctatgtgttttgctcggtaccatgtgtgtgcagtgg 381
Query: 478 ccacagaggccagagaagggtgtcagatccccagaactggagttacagatggctgtgagc 537
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 ccacagaggtcagagaagggtgtcagatccccagaactggagttacagatggttgtgagc 321
Query: 538 caccatttggatactgggaattaaacctaggctctcgagaaga 580
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 caccatttggatactgggaattaaacctaggttctcgagaaga 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 982
Length adjustment: 10
Effective length of query: 570
Effective length of database: 972
Effective search space: 554040
Effective search space used: 554040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_p14.g1 MSMg01no334_p14.g1 CHROMAT_FILE:
MSMg01no334_p14.g1 PHD_FILE: MSMg01no334_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:34 2005
(497 letters)
>mm_chr9_71004609_71005504
Length = 896
Score = 899 bits (465), Expect = 0.0
Identities = 489/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 1 tcatttgaaacactgaccacatattctttgaaaactctcctgagtaggaagtgcacttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttgaaacactgaccacatattctttgaaaactctcctgagtaggaagtgcacttgc 260
Query: 61 tgtctggaacacatgcactttatggcaacaattatttctctgactatgtctgaccaagaa 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctggaacacatgcattttatggcaacaattatttctctgactatgtctgaccaagaa 320
Query: 121 cctgcccagaacggaacttgaaacctgctgatgctcccagagaggggcacagtcatggaa 180
||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 321 cctgcccagaatggaacttgaaacctgcaaatgctcccagagaggggcccagtcatggaa 380
Query: 181 gagagcaacaaggacccctgtactctgtggggtctgtgatgtccgcagtccatgctgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagcaacaaggacccctgtactctgtggggtctgtgatgtccgcagtccatgctgccc 440
Query: 241 acgcccctacccctctgtgttctgtgttccaggacaattgcttttcatttccctccaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgcccctacccctctgtgttctgtgttccaggacaattgcttttcatttccctccaggg 500
Query: 301 cacagatcaagggcattgtgtttatttaaagcagttatgttttcttttcactcttgagat 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagatcaaggg-attgtgtttatttaaagcagttatgttttcttttcactcttgagat 559
Query: 361 gccaaaagataggtctccaatgggagaaactttggtggttaggaacgaattaccagtctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gccaaaagataggtctccaatgggagaaactttggtggttaggaacgaattaccagtctc 619
Query: 421 ccccactgaccatagcgtccacttcagaaaaatgcccttccctcagcatcaaaggtaaga 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 ccccactgaccatagcgtccacttcagaaaaatgcccttccctcatcatcaaaggtaaga 679
Query: 481 ggtgttagcatcctaaa 497
|| ||||||||||||||
Sbjct: 680 ggcgttagcatcctaaa 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
