Query= MSMg01no336_c01.b1 MSMg01no336_c01.b1 CHROMAT_FILE:
MSMg01no336_c01.b1 PHD_FILE: MSMg01no336_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:07 2005
(653 letters)
>mm_chr9_77125350_77126403
Length = 1054
Score = 1210 bits (626), Expect = 0.0
Identities = 644/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Minus
Query: 5 gaattctgc-ctttaccgagaagagcatcggctgtgttgattgtgggacagagcagcatt 63
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaattctgcacagtaccgagaagagcatcggctgtgttgattgtgggacagagcagcatt 795
Query: 64 ggctgttggaataataaatggtactgaatgttcctgcagcttttatgggaggcattgctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggctgttggaataataaatggtactgaatgttcctgcagcttttatgggaggcattgctc 735
Query: 124 tgccatcagggtcacattacctagctggaagcaaaatgagatgggcagaggaagatttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgccatcagggtcacattacctagctggaagcaaaatgagatgggcagaggaagatttct 675
Query: 184 ctaatcccctgtgaatgcatcccagagtgatttgattgttctcagtgtctttgagtaggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctaatcccctgtgaatgcatcccagagtgatttgattgttctcagtgtctttgagtaggg 615
Query: 244 tggctgggtgggacatgagcatgtatgaatagctgggaatctctttatatttgtgtaagt 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tggctgggtaggacatgagcatgtatgaatagctgggaatctctttatatttgtgtaagt 555
Query: 304 aaggagagaaaagaattctttgctttgcaaatttaggcttttttttttcctccttgagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaggagagaaaagaattctttgctttgcaaatttaggcttttttttttcctccttgagtt 495
Query: 364 cttcagagaataagagagatcagtatatttttagagattcttagcttgttccccaatcgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cttcagagaataagagagatcagtatatttttagagattcttagcttgttccccaatcgt 435
Query: 424 gactgctttaactgtgtgcagtgtaacctgcttattgtaaaagctgttttaatcttagca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gactgctttaactgtgtgcagtgtaacctgcttattgtaaaagctgttttaatcttagca 375
Query: 484 tcaaggggacatttgaatagtgaacaaaagctccaaatattcaaccactgtgaatttctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcaaggggacatttgaatagtgaacaaaagctccaaatattcaaccactgtgaatttctg 315
Query: 544 taaatttttctatacttcatttattttctgtctagaagttatgtatgtcaagacttaaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taaatttttctatacttcatttattttctgtctagaagttatgtatgtcaagacttaaag 255
Query: 604 gctccttgagaggaaacttcaaagacttctttttagtgacttcacatttg 653
|||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 254 gctccttgagagaaaacttcaaagacttctttttaatgacttcacatttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_c01.g1 MSMg01no336_c01.g1 CHROMAT_FILE:
MSMg01no336_c01.g1 PHD_FILE: MSMg01no336_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:07 2005
(589 letters)
>mm_chr9_77087300_77088288
Length = 989
Score = 1025 bits (530), Expect = 0.0
Identities = 574/589 (97%)
Strand = Plus / Plus
Query: 1 ctcccactgacctctgaaggataattcagtatcctctggaccctctcttgtttgctctca 60
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccactgacctctgacggataatccagtatcctctggaccctctcttgtttgctctca 260
Query: 61 gagctgaaggtcatatgatcactgtactcaaactgcaacagatgtagaaagataaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgaaggtcatatgatcactgtactcaaactgcaacagatgtagaaagataaaaaac 320
Query: 121 tgttgacacaggggtgacaaatgcatctttttgttaaaatatactaaaaatgtttaacct 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgttgacacaggggtgacaaatgcatctttttgttaaaatatgctaaaaatgtttaacct 380
Query: 181 tctcattggaaggtttttaatacattaaacaccaggctcacctgagagaaatagactgaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tctcattggaaggtttttaatacattaaacagcaggctcacctgagagaaatagactgaa 440
Query: 241 acagagtgttcctttgactggctcacctgtttgtattgccctaagtgcaaaagccttaga 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 acagagtgttcctttgactggctcacctgtttgtattgccctaagggcaaaagccttaga 500
Query: 301 gttcagacttcacatcaacaagtaatgcttactgcttcccagcaaatcatgagaaatgga 360
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||
Sbjct: 501 gttcagacttcacatcaacaagcaatgcttactgcttcccagtaaatcatgagaaaggga 560
Query: 361 gtgaggaatggaactgggatggatggggcaagaaaggtgatcagtggagatagttacgaa 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 561 gtgaggaatggaactgggatggatggggcaagaaaggggatcagtggagatagttacaaa 620
Query: 421 atagtggccatgtggattggaaaggctttacttaattatcaaacaaccagcatatccttt 480
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagcggccatgtggattggaaaggctttacttaattatcaaacaaccagcatatccttt 680
Query: 481 actggtggtgttgaggggaggaaattctattgaaagataccaaaataaaataaatttctg 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 actggtggtgttgaggggaggaaattctattgaaagataccaaaataaagtaaatttctg 740
Query: 541 aacttttganaggaaaggcaacattggcacaatgtgcatcaattatcag 589
||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 aacttttgaaaggaaaggcaacattggcataatgtgcatcaattatcag 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
