BAC Information

Click to search

BAC

Clone NameMSMg01-337I07
Chromosome9 (Build37)
Map Location 93,394,427 - 93,553,109
singlet/doubletdoublet
Overlap geneLOC674371
Upstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337I07.T7 (MSMg01no337_i07.b1)MSMg01-337I07.TJ (MSMg01no337_i07.g1)
ACCAG452275AG452276
length749759
length of high quality
(start - end)		595 (46 - 640)512 (75 - 586)
definitionCHROMAT_FILE: MSMg01no337_i07.b1 PHD_FILE: MSMg01no337_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:55 2005CHROMAT_FILE: MSMg01no337_i07.g1 PHD_FILE: MSMg01no337_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,552,519 - 93,553,109)(93,394,427 - 93,394,938)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTTACTACCCCCTGACCCATCTCCTCAGGCCCAAATCATCAT
TTTGTAAAGAATATTCACTGACAATTTTTAATCTGCAATATTGTTGGAAA
AGATATTCATACCTTTGCATAAGCTCAGGGTGTTATATAACAAATCAATT
TTAGAAATCACATGCATCTTTTTCAAATGGTTGACTTTTCTAAGCCCATC
TTTAACTTAAATAAAGTGTGTGTTTTGGCATCATTAAAACATGGATTCCT
ATTTTTATTGTTTTGTGCAAAATTTTCTGTAAGCTTTATGGTTTGCTTGC
TGCATTTTATGCCCATAGTAAGCTATGCCCATTTATTTGCTTACTTTCTT
CATTTCCTTCATGCTGTTCTTTTTTTTGGAAATACATTGATGAGCACAAA
TGAAATTTCTTTAGCAAATATCAGAACTTAATACTCATTGGGAAAATGGC
ATCATGAGCTGAAAAACATCTTTTTCTGCAAAATCATAATTTATGAGCAT
TGCTAGTTAGAAATAGTCAACCATTGATCTGTGTAAAAATGAAGATCTCA
GCATTTAAGTTCTGACATCCATCTCTACTAATTTGATAGGTTAGAGCTGT
GGAGATCAATTTAAGCCAGTTGGTATTTCAGAATCTCCCACACATAGTAC
ATCCTATGGCTAGGCAGTGCTAGAGAAACAAATTTTGTGGCATCCATTN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACATTGTTCTACCACATAGAGAA
GCCCAGGCACTGGGAGTTTTTCACCAAAGCACATAAAACTCCAAATAGTA
AAACATTTAAAAGCATAAAATTCTTCATCATATTTGCAATGGAAGTGAAT
GGATGAAGACAAATAATATGTGTTTCATTATTAAGCAGTTAACAAAGACT
AGGGCCAGAAACCTGGCCATAACAACAGATGGATGCATAAAGGAATCATT
TAGAGGAGAAACCTGGGAATAACCATTCATAACACTTGTCTGCCTGCCTT
TTCAACCTTAGCAGCGGTTTACAATATATTGTTTTGATAAATATGATAGA
ATGACTGTTACCAGTTAGTAACTCAAATACTCATTACCTTCCATAATGAG
CTCCTTGTTCATGTAGTAAAGTTATTTTAATCAGTTCTCTTAGCACATTT
TATTATACAACACCTATTAACTATTGTTCTTTTGTTGCATCTCTAGATTT
GTTCTTGCTACATAACTTCTACTTTATATTCTTTTAAGATAGAAGTGGGA
AATTTATCCTTTCTTGGATAACTGCACAGTTGTTAGCCATTGTCACATTA
CAGCTTAACTCTGTGGGAATCACTTATTGCTCCTAGGAAATCTTAAAATC
TCCTTGTTAGCCCCCCCTCCGAAGTTTGGTTTTTTTGGCAGGAACAAAAA
AATTGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_i07.b1 MSMg01no337_i07.b1 CHROMAT_FILE:
MSMg01no337_i07.b1 PHD_FILE: MSMg01no337_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:55 2005
         (595 letters)



>mm_chr9_93552315_93553309
          Length = 995

 Score = 1065 bits (551), Expect = 0.0
 Identities = 581/591 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgttactaccccctgacccatctcctcaggcccaaatcatcattttgtaaag 64
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 795 gaattcagtgttactagcccctgacccatctcctcaggcccaaatcatgattttgtaaag 736

                                                                       
Query: 65  aatattcactgacaatttttaatctgcaatattgttggaaaagatattcatacctttgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatattcactgacaatttttaatctgcaatattgttggaaaagatattcatacctttgca 676

                                                                       
Query: 125 taagctcagggtgttatataacaaatcaattttagaaatcacatgcatctttttcaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taagctcagggtgttatataacaaatcaattttagaaatcacatgcatctttttcaaatg 616

                                                                       
Query: 185 gttgacttttctaagcccatctttaacttaaataaagtgtgtgttttggcatcattaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gttgacttttctaagcccatctttaacttaaataaagtgtgtgttttggcatcattaaaa 556

                                                                       
Query: 245 catggattcctatttttattgttttgtgcaaaattttctgtaagctttatggtttgcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 catggattcctatttttattgttttgtgcaaaattttctgtaagctttatggtttgcttg 496

                                                                       
Query: 305 ctgcattttatgcccatagtaagctatgcccatttatttgcttactttcttcatttcctt 364
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 495 ctgcattttatgcccatagtaagctatgcccatttatttgctcaatttcttcatttcctt 436

                                                                       
Query: 365 catgctgttcttttttttggaaatacattgatgagcacaaatgaaatttctttagcaaat 424
           |||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catgttgtcctgttttttggaaatacattgatgagcacaaatgaaatttctttagcaaat 376

                                                                       
Query: 425 atcagaacttaatactcattgggaaaatggcatcatgagctgaaaaacatctttttctgc 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 375 atcagaacttaatactcattgggaaaatggcatcattagctgaaaaacatctttttctgc 316

                                                                       
Query: 485 aaaatcataatttatgagcattgctagttagaaatagtcaaccattgatctgtgtaaaaa 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 aaaatcataatttatgagcattgctaattagaaatagtcaaccattgatctgtgtaaaaa 256

                                                              
Query: 545 tgaagatctcagcatttaagttctgacatccatctctactaatttgatagg 595
           |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 tgaagatctcagcatttaagttctgacatccatctctactaattcgatagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_i07.g1 MSMg01no337_i07.g1 CHROMAT_FILE:
MSMg01no337_i07.g1 PHD_FILE: MSMg01no337_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:56 2005
         (512 letters)



>mm_chr9_93394227_93395138
          Length = 912

 Score =  905 bits (468), Expect = 0.0
 Identities = 501/512 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacattgttctaccacatagagaagcccaggcactgggagtttttcaccaaagcacat 60
           |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 201 agaacattgttctacctcatagagaagcccaggcactgggcgtttttcaccaaagcccat 260

                                                                       
Query: 61  aaaactccaaatagtaaaacatttaaaagcataaaattcttcatcatatttgcaatggaa 120
           ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aaagctccaaatagtgaaacatttaaaagcataaatttcttcatcatatttgcaatggaa 320

                                                                       
Query: 121 gtgaatggatgaagacaaataatatgtgtttcattattaagcagttaacaaagactaggg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaatggatgaagacgaataatatgtgtttcattattaagcagttaacaaagactaggg 380

                                                                       
Query: 181 ccagaaacctggccataacaacagatggatgcataaaggaatcatttagaggagaaacct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaaacctggccataacaacagatgaatgcataaaggaatcatttagaggagaaacct 440

                                                                       
Query: 241 gggaataaccattcataacacttgtctgcctgccttttcaaccttagcagcggtttacaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 gggaataacctttcataacacttgtctgcctgccttttcaaccttagcatcagtttacaa 500

                                                                       
Query: 301 tatattgttttgataaatatgatagaatgactgttaccagttagtaactcaaatactcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatattgttttgataaatatgatagaatgactgttaccagttagtaactcaaatactcat 560

                                                                       
Query: 361 taccttccataatgagctccttgttcatgtagtaaagttattttaatcagttctcttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccttccataatgagctccttgttcatgtagtaaagttattttaatcagttctcttagc 620

                                                                       
Query: 421 acattttattatacaacacctattaactattgttcttttgttgcatctctagatttgttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattttattatacaacacctattaactattgttcttttgttgcatctctagatttgttc 680

                                           
Query: 481 ttgctacataacttctactttatattctttta 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctacataacttctactttatattctttta 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |