BAC Information

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BAC

Clone NameMSMg01-337M07
Chromosome9 (Build37)
Map Location 31,779,192 - 31,942,816
singlet/doubletdoublet
Overlap geneLOC666619, LOC666622
Upstream geneZbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M07.T7 (MSMg01no337_m07.b1)MSMg01-337M07.TJ (MSMg01no337_m07.g1)
ACCAG452462AG452463
length770803
length of high quality
(start - end)
472 (47 - 518)326 (76 - 401)
definitionCHROMAT_FILE: MSMg01no337_m07.b1 PHD_FILE: MSMg01no337_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:14 2005CHROMAT_FILE: MSMg01no337_m07.g1 PHD_FILE: MSMg01no337_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,942,350 - 31,942,816)(31,779,192 - 31,779,517)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTAATTTTCTGTGTGTGTTGAATGTAACACTTTAATACAGAGT
GAGTGTACTATTAACAAAAATAATGCTGTCTTCTATTCACAAATTCAATG
TAGATCTACAGGAAGTTATAAAACTATAAGGAAGAATTATGAAAGACAAT
AATGGACAAACAAATCACTAAATACCCTTTTGATGGAATGCTGTTGCCTC
CAGGAATTACTTGAATTAGTATTGAATTTTGACTATTTTAAACATAGTAA
AAATGGAATTCAATTTACAGAATATTGATAGTAATTCAAATAGTCTCAAG
TTAAAAGAGATACAAATTGTGTCCCCTGGAATGGAGCAGTCTGCATCCAT
GTGCACGTGCTGTAGCACCAGACAATGTAAATGAAGCTGCTTTGGATCTC
TAGAGCAGTTTTAATGTCTGACAGCAAACATGTCACCTTGACAAGATCTG
AAATCAACTGAAAGGCACAGTGTGGCGTGTTTTCTTGATGAGACTAACTG
AAGTGGATGACCCTACCCAAAAGTGGGTGTACCTTGGAATGGTGGCTCTG
ATAAAAGAAGGCCCCCAAGCCAGCTTTTGTTTTTGTGAAACTTGGCTTCT
TGCCTCCCTGGGAAAATGTTCTGAAGTCTCCTGAATTCATCCCCCTCGGC
TGGTGTTGGCGGCCCCCCCTCCCCTTGTCCCGCCTGTCCTTTTCTCCTAA
ATTTTTGATTTTTTTTCTTG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGGCCAGAGTGACATAGAGA
GACTGTCTCAAAAAAAGAGCAACAAGGAAAATACCAGAATCTAGACAAAT
AAGAGCAACCTTAGGGTGAGGAAAGTAGTGTGTGCTGGGGGTGTGGAACT
AGCTTTCCTTCATAGAAGGAAAGGGTAGCCAGTGGAGGATACCATTAATT
TGGGAAGTAGAGAAAAACTGTGTCTTCCTCAGCATTTTACAGAGGTTCAA
GCCTTGGTAGTGCTCTCCCCTTGGATCTGGGCAGCTGTCAGAAAATCAGT
GGGGAGGAGGAACAAACATATGTCAAGACACAGGCAGCATCTAACTGCAA
AAGCTGAGCCACAGGCCCAGCTCCACCAGATGGCAGTGCGTCAACAGGGA
GCCTGGCTACGAGACTGGGGAATCCCAATTACTTGACCCTGTGTGGGTGC
AGGAGCACTGAGACTGTTAAATTGCTGCTGATAATGTTTCGTGTCTCCTG
AACTCCATGAGGGACTTGTTTTCCTTTCTAGCATAGATTGCTCGCTTGGG
TGTCTCTTACTAATCTTCTTTTGTCTTCTTCCTACTTCTTCTTTCCTGCG
TTTGTTTTTTTTTTTCTTCCTTTTTTTATTCTCCCCGACACGCTTATTTG
TTGGCCTCTCCTTATTTTATCTCTTTCCCTTCTTGTCTATATGTTCCCTC
CTCCTTATTTTTCTTTTCTCCTTATTCTCTTTCATCCATTCGCTCGCCGC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m07.b1 MSMg01no337_m07.b1 CHROMAT_FILE:
MSMg01no337_m07.b1 PHD_FILE: MSMg01no337_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:14 2005
         (472 letters)



>mm_chr9_31942146_31943017
          Length = 872

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaattttctgtgtgtgttgaatgtaacactttaatacagagtgagtgtacta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattcagtaattttgtgtgtgtgttgaatgtaacactttaatacagagtgagtgtacta 612

                                                                       
Query: 65  ttaacaaaaataatgctgtcttctattcacaaattcaatgtagatctacaggaagttata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttaacaaaaataatgctgtcttctattcacaaattcaatgtagatctacaggaagttata 552

                                                                       
Query: 125 aaactataaggaagaattatgaaagacaataatggacaaacaaatcactaaatacccttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaactataaggaagaattatgaaagacaataatggacaaacaaatcactaaatacccttt 492

                                                                       
Query: 185 tgatggaatgctgttgcctccaggaattacttgaattagtattgaattttgactatttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgatggaatgctgttgcctccaggaattacttgaattagtattgaattttgactatttta 432

                                                                       
Query: 245 aacatagtaaaaatggaattcaatttacagaatattgatagtaattcaaatagtctcaag 304
           |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 431 aacatagtaaaaatggaattcaatttacagaaaactgaaagtaattcaaatagtctcaag 372

                                                                       
Query: 305 ttaaaagagatacaaattgtgtcccctggaatggagcagtctgcatccatgtgcacgtgc 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 ttaaaagagatacaaattgtgtcccctagaatggagcagtctgcatccatgtgcacgtgc 312

                                                                       
Query: 365 tgtagcaccagacaatgtaaatgaagctgctttggatctctagagcagttttaatgtctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtagcaccagacaatgtaaatgaagctgctttggatctctagagcagttttaatgtctg 252

                                                          
Query: 425 acagcaaacatgtcaccttgacaagatctgaaatcaactgaaaggca 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acagcaaacatgtcaccttgacaagatctgaaatcaactgaaaggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no337_m07.g1 MSMg01no337_m07.g1 CHROMAT_FILE:
MSMg01no337_m07.g1 PHD_FILE: MSMg01no337_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:15 2005
         (326 letters)



>mm_chr9_31778992_31779717
          Length = 726

 Score =  586 bits (303), Expect = e-172
 Identities = 321/327 (98%), Gaps = 2/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagggccagagtgacatagagagactgtctcaaaaaaagagcaacaaggaaaatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagggccagagtgacatagagagactgtctcaaaaaaagagcaacaaggaaaatacc 260

                                                                       
Query: 61  agaatctagacaaataagagcaaccttaggg-tgaggaaagtagtgtgtgctgggggtgt 119
           ||||||||||||||||||||||||||| ||| ||||||||  ||||||||||||||||||
Sbjct: 261 agaatctagacaaataagagcaacctt-gggatgaggaaaaaagtgtgtgctgggggtgt 319

                                                                       
Query: 120 ggaactagctttccttcatagaaggaaagggtagccagtggaggataccattaatttggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaactagctttccttcatagaaggaaagggtagccagtggaggataccattaatttggg 379

                                                                       
Query: 180 aagtagagaaaaactgtgtcttcctcagcattttacagaggttcaagccttggtagtgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtagagaaaaactgtgtcttcctcagcattttacagaggttcaagccttggtagtgct 439

                                                                       
Query: 240 ctccccttggatctgggcagctgtcagaaaatcagtggggaggaggaacaaacatatgtc 299
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 ctccccttggatctggacagctgtcagaaaatcaatggggaggaggaacaaacatatgtc 499

                                      
Query: 300 aagacacaggcagcatctaactgcaaa 326
           |||||||||||||||||||||||||||
Sbjct: 500 aagacacaggcagcatctaactgcaaa 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)