Query= MSMg01no338_d10.b1 MSMg01no338_d10.b1 CHROMAT_FILE:
MSMg01no338_d10.b1 PHD_FILE: MSMg01no338_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:48 2005
(638 letters)
>mm_chr9_65915777_65916814
Length = 1038
Score = 1160 bits (600), Expect = 0.0
Identities = 624/632 (98%)
Strand = Plus / Plus
Query: 5 gaattccagtatctccttgggcacatcctgattcaggtacaggatgccctagagaagaag 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtaactccttgggcacatcctgattcaggtacaggatgccctagagaagaag 264
Query: 65 gcagagaaagtctgcaatcagataagatccagctattaattgcacaacccattacaacaa 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gcagagaaagtctgcaatcagataagatccagctactaattgcacaacccattacaacaa 324
Query: 125 ttttcaggacatttgttccaaaataatgaagactttcaaggcagtagaaataagtattag 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgaggacatttgttccaaaataatgaagactttcaaggcagtagaaataagtattag 384
Query: 185 cccaaactcagggtcatcctaaggaatgaaccgcaaagactagcaccacaaagtgggcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccaaactcagggtcatcctaaggaatgaaccgcaaagactagcaccacaaagtgggcag 444
Query: 245 gctagtcaaataactatcactgttagaggaaggagtccacacacacctcattaagaaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gctagtcaaataactatcactgttagaggaaggagtccacacacacctcatgaagaaaat 504
Query: 305 acaggaaaacaccctaagggtgaagaatctactcgttggattattcaaaactttcattaa 364
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 505 acaggaaaacaccctaagggtgaagaatctactcattggattattcaaaactttcaataa 564
Query: 365 cccagatagaaaagttcgtactcatttggacaaagagcctgagatactgaataacaaccc 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 cccagatagaaaagttcgtactcatttggataaagagcctgagatactgaataacaaccc 624
Query: 425 caagttgtgggacccaacacactcccacatctctaactgggtctcccctggtccctcaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagttgtgggacccaacacactcccacatctctaactgggtctcccctggtccctcaga 684
Query: 485 cttaggggcaaccaagtgtaccccgtgcacacctggatgtaggtctctaatccctgccgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttaggggcaaccaagtgtaccccgtgcacacctggatgtaggtctctaatccctgccgg 744
Query: 545 cgctgttccagtcctctggtcctccagttgggcagacgttttgagggaaagtcaggcact 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 cgctgttccagtcctctggtcctccagttgggcaggcgttttgagggaaagtcaggcact 804
Query: 605 ttgtaccgtttcttgatctgtacatcagttac 636
||||||||||||||||||||||||||||||||
Sbjct: 805 ttgtaccgtttcttgatctgtacatcagttac 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_d10.g1 MSMg01no338_d10.g1 CHROMAT_FILE:
MSMg01no338_d10.g1 PHD_FILE: MSMg01no338_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:48 2005
(543 letters)
>mm_chr9_66039231_66040172
Length = 942
Score = 996 bits (515), Expect = 0.0
Identities = 536/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 1 atgagctactaataagaagtcttggagaactctctgttcctacagcaagtgacagagata 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 atgagctactaataagaagtcttgaagaactctctgttcctacagcaagtgacagagata 683
Query: 61 aatgaactccccgttccatcaggagatgctttcatctaaacggcacacacgctgagggct 120
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 682 aatgaact-cccgttccatcaggagatgctttcatctaaacggcacacatgctgagggct 624
Query: 121 tttggaataagtcccacgaaggagagcctttcttgttgggttctcggcctagctcttcca 180
||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 623 tttggaataagtcccgcgaaggagagcctttcttgttgagttcttggcctagctcttcca 564
Query: 181 tccactacatatgtgaggcactacatatgtacagtctgttctctctagccacaatgactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tccactacatatgtgaggcactacatatgtacagtctgttctctctagccacaatgactt 504
Query: 241 tgacctcttgatgatccagttccccttataaactgcaaaccaacctttctcatttcttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgacctcttgatgatccagttccccttataaactgcaaaccaacctttctcatttcttca 444
Query: 301 cacagccacgtggacaaactgcaaagctgtcctgtaaggaacttcataagcacttgcaaa 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catagccacgtggacaaactgcaaagctgtcctgtaaggaacttcataagcacttgcaaa 384
Query: 361 cacacagcactgtgggagctatcagcactataattccagcactgggcggatgccgtggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacacagcactgtgggagctatcagcactataattccagcactgggcggatgccgtggaa 324
Query: 421 aacctctgtacacgttcaccactggacagttggggagaggataatcatactgtaaccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacctctgtacacgttcaccactggacagttggggagaggataatcatactgtaaccagg 264
Query: 481 gtcaacaggagagaaaactccaaagatccactcattaaccgtacacacactcagggaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcaacaggagagaaaactccaaagatccactcattaaccgtacacacactcagggaaat 204
Query: 541 act 543
|||
Sbjct: 203 act 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
