BAC Information

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BAC

Clone NameMSMg01-339A13
Chromosome9 (Build37)
Map Location 33,059,872 - 33,103,679
singlet/doubletdoublet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339A13.T7 (MSMg01no339_a13.b1)MSMg01-339A13.TJ (MSMg01no339_a13.g1)
ACCAG453419AG453420
length731763
length of high quality
(start - end)		617 (77 - 693)501 (77 - 577)
definitionCHROMAT_FILE: MSMg01no339_a13.b1 PHD_FILE: MSMg01no339_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:47 2005CHROMAT_FILE: MSMg01no339_a13.g1 PHD_FILE: MSMg01no339_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,059,872 - 33,060,488)(33,103,179 - 33,103,679)
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTCCAAGTATCTCAAGGAAATGTTAACCCCAACACTCCTCAAATA
TTCCACAAAATAGAAACAGAAGGAATGCTGCTCAATTATTTTTATGAGGC
CACATTTACTCTGACACTCAAACCACATAAAGACCAAACACAGAATTACA
GATCAATCTCCCTTATGAACATAGATGCAAAACTTCTCAATAAAATACTT
GTAACTGAATCCAAGAACACATCAAAAGATCACCCACCACAATTGAGTAG
ACACACAGAAGCTGACAGTCAGCCCTACTATATGCTGGGGAGGGGGATTT
CCAGTTTTAGAAACTGTTTCATCCTTGGATAACTGTCCCTGGCCTTTCCC
TGTTATATGTTTGTTTGTTTGTAATTAGAATTTAAAATGGAATGGCAGAT
TCAAGAGCTAGAAACCATCAGGGGAAAGAAATCATGTTTCCTCAGAGAAG
ATCTGATAATAATCTGCAGAGTGAGGTGGGCTAGCTTTGTTAATAATTCT
CTGGAAGCTTTGGGCCATAGACATTTGCCCAGGCCAGAAAATAACAGTCT
TGACCCTGGCCCTATTTTTTCTTGCTGCTCTTTGGTATTGATTCTTTCTT
CTTCATGAACTCCTTGACTCTGAGAATGGACACAAATAGCTCCGTGCAGG
AAACCCATTACATATTTTCCTCCAGGCTTCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGAGGGAAGCACAAGTGACT
AACTCCTCAACTCCCTAGGGTTGTCATTCTCTGGCTGGGAAGTTCAAAGG
AAAATCTTAGAGACATAAACAAGCATAGGGTCCTTTTCATATCTCAGTCA
TCCCTGCAGATCTGAAAGTCTGCCAGAGACTTTGTGGGCTTAGGAAAGAC
AGGAGAAAGGAGAAAATAGTCACTCACCTCTAGCTTACCTTGAGGCCATG
AGCAAACAAACCTGAAAGCAAATTTCTTTTTGAAGTTTCAACTTGTATCA
TTATGCACAGACCCACAGGGAAAAGGGAAAGAAGATATACAGACAAGACT
TCTAGGGAAACCTTATAAATAATCATTGCTGAACCAGTAAATTCTATGGA
CCCACATAAGCCCCAAGAAAGAAGACTTAGAAATAAAACCCAGATATTAA
AGAAGAAAAAAACGTTTTCAAAGACCTCAGTGACCTTACAATCAATGTAC
TCTTGAAAATATCTGGAAATCAGGATGTTCCTGTGTTTGAGACAAAGAAC
CTCAATTTTTTTTCTATCACAGAGACNAAAGATTCCCAGACNAAGACCAG
TCCATGGGAAGATCCTGAGATGTGGAGCATTTAGGTATACACAGGAAGAG
CTAATTTGGCCTGAAAGACTTGTGTACAAAAAGGAGGAATTGGAACTAAT
CCCCAGCTTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_a13.b1 MSMg01no339_a13.b1 CHROMAT_FILE:
MSMg01no339_a13.b1 PHD_FILE: MSMg01no339_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:47 2005
         (617 letters)



>mm_chr9_33059672_33060688
          Length = 1017

 Score = 1193 bits (617), Expect = 0.0
 Identities = 617/617 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaaccccaacactcctcaaatattccacaaaatagaaacagaaggaatgctgctcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaaccccaacactcctcaaatattccacaaaatagaaacagaaggaatgctgctcaat 260

                                                                       
Query: 61  tatttttatgaggccacatttactctgacactcaaaccacataaagaccaaacacagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttttatgaggccacatttactctgacactcaaaccacataaagaccaaacacagaat 320

                                                                       
Query: 121 tacagatcaatctcccttatgaacatagatgcaaaacttctcaataaaatacttgtaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagatcaatctcccttatgaacatagatgcaaaacttctcaataaaatacttgtaact 380

                                                                       
Query: 181 gaatccaagaacacatcaaaagatcacccaccacaattgagtagacacacagaagctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatccaagaacacatcaaaagatcacccaccacaattgagtagacacacagaagctgac 440

                                                                       
Query: 241 agtcagccctactatatgctggggagggggatttccagttttagaaactgtttcatcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcagccctactatatgctggggagggggatttccagttttagaaactgtttcatcctt 500

                                                                       
Query: 301 ggataactgtccctggcctttccctgttatatgtttgtttgtttgtaattagaatttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggataactgtccctggcctttccctgttatatgtttgtttgtttgtaattagaatttaaa 560

                                                                       
Query: 361 atggaatggcagattcaagagctagaaaccatcaggggaaagaaatcatgtttcctcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggaatggcagattcaagagctagaaaccatcaggggaaagaaatcatgtttcctcaga 620

                                                                       
Query: 421 gaagatctgataataatctgcagagtgaggtgggctagctttgttaataattctctggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagatctgataataatctgcagagtgaggtgggctagctttgttaataattctctggaa 680

                                                                       
Query: 481 gctttgggccatagacatttgcccaggccagaaaataacagtcttgaccctggccctatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctttgggccatagacatttgcccaggccagaaaataacagtcttgaccctggccctatt 740

                                                                       
Query: 541 ttttcttgctgctctttggtattgattctttcttcttcatgaactccttgactctgagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttcttgctgctctttggtattgattctttcttcttcatgaactccttgactctgagaa 800

                            
Query: 601 tggacacaaatagctcc 617
           |||||||||||||||||
Sbjct: 801 tggacacaaatagctcc 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_a13.g1 MSMg01no339_a13.g1 CHROMAT_FILE:
MSMg01no339_a13.g1 PHD_FILE: MSMg01no339_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:48 2005
         (501 letters)



>mm_chr9_33102979_33103879
          Length = 901

 Score =  938 bits (485), Expect = 0.0
 Identities = 497/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctgagggaagcacaagtgactaactcctcaactccctagggttgtcattctctggct 60
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 accctgagggaggcacaagtgactaagtcctcaactccctagggttgtcattctctggct 642

                                                                       
Query: 61  gggaagttcaaaggaaaatcttagagacataaacaagcatagggtccttttcatatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gggaagttcaaaggaaaatcttagagacataaacaagcatagggtccttttcatatctca 582

                                                                       
Query: 121 gtcatccctgcagatctgaaagtctgccagagactttgtgggcttaggaaagacaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtcatccctgcagatctgaaagtctgccagagactttgtgggcttaggaaagacaggaga 522

                                                                       
Query: 181 aaggagaaaatagtcactcacctctagcttaccttgaggccatgagcaaacaaacctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaggagaaaatagtcactcacctctagcttaccttgaggccatgagcaaacaaacctgaa 462

                                                                       
Query: 241 agcaaatttctttttgaagtttcaacttgtatcattatgcacagacccacagggaaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agcaaatttctttttgaagtttcaacttgtatcattatgcacagacccacagggaaaagg 402

                                                                       
Query: 301 gaaagaagatatacagacaagacttctagggaaaccttataaataatcattgctgaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaaagaagatatacagacaagacttctagggaaaccttataaataatcattgctgaacca 342

                                                                       
Query: 361 gtaaattctatggacccacataagccccaagaaagaagacttagaaataaaacccagata 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtaaattctatagacccacataagccccaagaaagaagacttagaaataaaacccagata 282

                                                                       
Query: 421 ttaaagaagaaaaaaacgttttcaaagacctcagtgaccttacaatcaatgtactcttga 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttaaagaagaaaaaaatgttttcaaagacctcagtgaccttacaatcaatgtactcttga 222

                                
Query: 481 aaatatctggaaatcaggatg 501
           |||||||||||||||||||||
Sbjct: 221 aaatatctggaaatcaggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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