BAC Information

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BAC

Clone NameMSMg01-341P20
Chromosome9 (Build37)
Map Location 33,273,648 - 33,312,595
singlet/doubletdoublet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P20.T7 (MSMg01no341_p20.b1)MSMg01-341P20.TJ (MSMg01no341_p20.g1)
ACCAG455650AG455651
length763788
length of high quality
(start - end)		535 (37 - 571)456 (69 - 524)
definitionCHROMAT_FILE: MSMg01no341_p20.b1 PHD_FILE: MSMg01no341_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:23 2005CHROMAT_FILE: MSMg01no341_p20.g1 PHD_FILE: MSMg01no341_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,273,648 - 33,274,177)(33,312,274 - 33,312,595)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAT
GATCTGTCCATTTTAGTTCAGATTTCCCTACTAGTTACTGGTTCCTACAG
TACATTTCTCAGTTGCATTTTTGCTCCAGAAAGTTATAGTCCTCTCTGAC
TGCTGGTTTCTCTCCTCCTTTGGAATATGAGTTTGAGTGATGGAGACAAA
CAAAGCTTTGAATACTCTTTGTTGTTGTTTAACTTTTTACTTGTTAAAAT
GGAAAATAAACTTGTATATGCCAGACTAGAAACAACAAAATGAGGTTTTT
TTAAAAATTTCTCTCTGTTTTTCCAATGATTCTGTATACAATTAATTTCA
TTTGTTTTGTTTTGTTACTGTTCCAAGATGATTTGCGGATAGACTGCTTT
TCCCAACGATATATGCCAGTAAAATTTAAAAGATGATACATATTGTATGT
GAAGAGGAAAATGAGCACCTTTCTAATCTTGCTTCTGTTAGTTTCTTTTG
GAGAGCAAGGCCTAGTGGTGCATGCTTTTAATACCAGCACTTGGGAAATA
GAGGCAGTAAGAGTTCAAGGTCAGCCTGGTCTACATAGTGAGACCCTGTC
TCACTAATAATAATAATAATAATAATAATAATAATAATAATAATGATTAT
GATACTTCCTACCCCCTCTCACCCCTTTACTTTCACCTTTAATGTCATTA
TGACTTTCCAGAATATTTGTTTGGTCTTTCCATTTTTACCCCCAGAAAAC
ATGTTTTTGGGTA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATGTAGATGCTAGGAATTGAACATGGGAAG
AACAGTCAGTACTCTTTTTTTATTTTCTTTGGGGGGGGGCAGTACTGTTC
TTGTTTTCTTTACAATTTTAGGGGGACAAAAGATTCATTTTTACCACAGG
TCTGAGTAATTTTTACATGTTTTCTTATAAAATAAAGATGTAATCCATTT
CATTTTGAGGAAAAATTTTATGACTTCTCTTTGGACTATCCAAATTTGCC
AGCAACACTACATCCTGAGCCATTATTAAATGAAATAACATTTCCTTGAA
CAAAGATATTATTGTACTAAGATGGTCAATTTGATAACTAAAACAATCAT
TAGACAAGTGGTTATGAGGCATTTGAAATGATACTAGCTTACTTTAAATT
TTTATTTCCTAATTATTTAACCTTAATACTAGAAATATAGTGATTGTTTT
TAGCGCTGCATTGTACAGACAGTGTATAGCAGATGTTTCCAGGACATACG
TATAGTTCATTATCCCATATCTTATTACTCAGGATACTGGACAATTTTAA
ATTACCATTGGCATTTTTTTTCTTACAATTTTAAACCTAAAACTTTGTAA
CTGAAATGCCTGTCGGCTCTAAATGGTGACTTCTAACCCCACTTTCGGCC
CTTTGAATACCCTTTTTCTTTCCCTTATCCTTCTTCTTCGGGAATAACCC
TGTTCCTACCACCGTCTAACCGTTTTATTGCTACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p20.b1 MSMg01no341_p20.b1 CHROMAT_FILE:
MSMg01no341_p20.b1 PHD_FILE: MSMg01no341_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:23 2005
         (535 letters)



>mm_chr9_33273444_33274378
          Length = 935

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatgatctgtccattttagttcagatttccctactagttactggttcctacag 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcacatgatctgtccattttagttcagatttcccaactagttactggttcctacag 264

                                                                       
Query: 65  tacatttctcagttgcatttttgctccagaaagttatagtcctctctgactgctggtttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatttctcagttgcatttttgctccagaaagttatagtcctctctgactgctggtttc 324

                                                                       
Query: 125 tctcctcctttggaatatgagtttgagtgatggagacaaacaaagctttgaatactcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcctcctttggaatatgagtttgagtgatggagacaaacaaagctttgaatactcttt 384

                                                                       
Query: 185 gttgttgtttaactttttacttgttaaaatggaaaataaacttgtatatgccagactaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgttgtttaactttttacttgttaaaatggaaaataaacttgtatatgccagactaga 444

                                                                       
Query: 245 aacaacaaaatgaggtttttttaaaaatttctctctgtttttccaatgattctgtataca 304
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 aacaacaaaatgagttttttttaaaaatttctctctgttttcccaatgattctgtataca 504

                                                                       
Query: 305 attaatttcatttgttttgttttgttactgttccaagatgatttgcggatagactgcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaatttcatttgttttgttttgttactgttccaagatgatttgcggatagactgcttt 564

                                                                       
Query: 365 tcccaacgatatatgccagtaaaatttaaaagatgatacatattgtatgtgaagaggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcccaacgatatatgccagtaaaatttaaaagatgatacatattgtatgtgaagaggaaa 624

                                                                       
Query: 425 atgagcacctttctaatcttgcttctgttagtttcttttggagagcaaggcctagtggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgagcacctttctaatcttgcttctgttagtttcttttggagagcaaggcctagtggtg 684

                                                             
Query: 485 catgcttttaataccagcacttgggaaatagaggcagtaagagttcaagg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgcttttaataccagcacttgggaaatagaggcagtaagagttcaagg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_p20.g1 MSMg01no341_p20.g1 CHROMAT_FILE:
MSMg01no341_p20.g1 PHD_FILE: MSMg01no341_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:23 2005
         (456 letters)



>mm_chr9_33311740_33312595
          Length = 856

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 135 tgagtaatttttacatgttttcttataaaataaagatgtaatccatttcattttgaggaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tgagtaatttttacatgttttcttataaaataaagatgtaatccatttcattttgaggaa 797

                                                                       
Query: 195 aaattttatgacttctctttggactatccaaatttgccagcaacactacatcctgagcca 254
           |||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 796 aaatctcatgacttctctttgaaccatccaaatttgccagcaacactacatcctgagcca 737

                                                                       
Query: 255 ttattaaatgaaataacatttccttgaacaaagatattattgtactaagatggtcaattt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttattaaatgaaataacatttccttgaacaaagatattattgtactaagatggtcaattt 677

                                                                       
Query: 315 gataactaaaacaatcattagacaagtggttatgaggcatttgaaatgatactagcttac 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gataactaaaacaatcattagacaagtggttatgaggcatttgaaatgatactagcttac 617

                                                                       
Query: 375 tttaaatttttatttcctaattatttaaccttaatactagaaatatagtgattgttttta 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttaaatttttatttcctaattatttaaccttaatactagaaatatagtgattgttttta 557

                                 
Query: 435 gcgctgcattgtacagacagtg 456
           | ||||||||||||||||||||
Sbjct: 556 gtgctgcattgtacagacagtg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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