BAC Information

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BAC

Clone NameMSMg01-344P16
Chromosome9 (Build37)
Map Location 31,449,001 - 31,608,372
singlet/doubletdoublet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344P16.T7 (MSMg01no344_p16.b1)MSMg01-344P16.TJ (MSMg01no344_p16.g1)
ACCAG457912AG457913
length751748
length of high quality
(start - end)		500 (54 - 553)457 (69 - 525)
definitionCHROMAT_FILE: MSMg01no344_p16.b1 PHD_FILE: MSMg01no344_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:20 2005CHROMAT_FILE: MSMg01no344_p16.g1 PHD_FILE: MSMg01no344_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,449,001 - 31,449,494)(31,607,916 - 31,608,372)
sequence
NATTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTGTTGTCTTAGGTAGAAACCTGTTCTTTTCTTTCT
TTTCGAAGACTTGGGAGCCCATGCTTGCTACATGCCAAGTGTGATAGAGA
AGTGAGTGGAATCTCGCAGGACTCTGAGGAGGGAGTTGGGTAAGCTAATT
ATATGCATTACTGCCATTCCTGACTACCGGGATAACACACAATCCCAAAG
CTAGGGCCTGGACAAATGAGAGACAGATGACATTTCTGACTGCAAAAGTT
CTCTCTCAACACAGACATCATCCTTTCCCTCCAGAGAATTTGAAACTGTT
CTTCCTACTCAAATGCCCATAGCGAAATCCCTCGCCCCGATCACCCACAC
ACTCAACGTTCACAACACTTCATGGGGCCAGGATAGCTCACACATTTCTT
TGCTGTCATTTATGAACCAGTTGCTGTGTGAGGGAAATAGGAATCTGGTT
CATGAAGTCTTTAGGAGGCAGAAAGAGAAGGGGGAATAATTAGTAATAAT
AATACTAATCCAGCCAGAAGAGAGATTGCCCAACATGGATATGTACCAGA
CAATTAAGGGTGTGTGTGTGTGTGTGTGTGTTTTCTCTTTACCTCATTTG
TTGATTCTTTTCCCTTTACTCCCCAGTTTTCCTTAATTTTTTTGTTATCT
TTATTTTCCTTCTTCTCTGTCTCTGTGCTTTCTGGATCTCGACATATTCA
T

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTAGGAGTTCATTTGTGTCCTCGTTAGTTT
TAAAAATATTTTTATAATCACTCTTTTAAACTTTAAGATTTTATCTATTT
GACTGTCATTGGGAGCCATTACTGTGGGACTGACATTTTTCAGGGGGAAC
ATCATATGGCCTTGCTTTCTGTTTTATTAATGTGCTTGGACTTAAGCATA
TGCGGCTATTCCACTGACTCACTGTAATTCATTGTTTTATGGGCTGTATT
GATTGAGTTGATTTACTTGCAATATCCAGTTGGGGCTCCATTGTGATGGG
GTTGAGGTGGATAGTTCATAAGTTAAACACTGAATCCATGTGCTCAGTGT
AAGCAACCCCACAGTGAAGCCACTGAATTAGACCACTCCGTGGGTAAAAA
CAAAGGTTTACTCAAACTGCCAAGGCAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTTAAGGCTAGGGAA
GCTTTGCTGGTTTTATACAAACTGGCGGTGGGCTGTAGATCGCTTTATTA
TTTAATATCCTTTGTCTGCTCTTTCCAGAGTGACTCTGACTCATTTCTTC
TTTTCCTACTTGGTGCTTTCACAAATAATTTTTACTTCCCCCTTTCAAGT
TTGTATAGTGTCACCTAATGCATCTTCGATGTCTTCACACATTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_p16.b1 MSMg01no344_p16.b1 CHROMAT_FILE:
MSMg01no344_p16.b1 PHD_FILE: MSMg01no344_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:20 2005
         (500 letters)



>mm_chr9_31448795_31449694
          Length = 900

 Score =  878 bits (454), Expect = 0.0
 Identities = 484/494 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctctgttgtcttaggtagaaacctgttcttttctttcttttcgaagacttgggagcc 66
           ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 attctctgtggtattaggtagaaacctgttcttttctttctttttgaagacttgggagcc 266

                                                                       
Query: 67  catgcttgctacatgccaagtgtgatagagaagtgagtggaatctcgcaggactctgagg 126
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 267 catgcttgctacatgccaagtgtgatagagaagtgagtggaatcttgcaggactctgagg 326

                                                                       
Query: 127 agggagttgggtaagctaattatatgcattactgccattcctgactaccgggataacaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agggagttgggtaagctaattatatgcattactgccattcctgactaccgggataacaca 386

                                                                       
Query: 187 caatcccaaagctagggcctggacaaatgagagacagatgacatttctgactgcaaaagt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 caatcccaaagctagggcctggacaaatgagagacagatgacatttctgattgcaaaagt 446

                                                                       
Query: 247 tctctctcaacacagacatcatcctttccctccagagaatttgaaactgttcttcctact 306
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctctctcaacacagacatcatcttttccctccagagaatttgaaactgttcttcctact 506

                                                                       
Query: 307 caaatgcccatagcgaaatccctcgccccgatcacccacacactcaacgttcacaacact 366
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caaatgcccatagcgaactccctcgccccgatcacccacacactcaacgttcacaacact 566

                                                                       
Query: 367 tcatggggccaggatagctcacacatttctttgctgtcatttatgaaccagttgctgtgt 426
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 567 tcatggggccaggatagctcacacatttctttcctgttatttatgaaccagttgctgtgt 626

                                                                       
Query: 427 gagggaaataggaatctggttcatgaagtctttaggaggcagaaagagaagggggaataa 486
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagggaaataggagtctggttcatgaagtctttaggaggcagaaagagaagggggaataa 686

                         
Query: 487 ttagtaataataat 500
           ||||||||||||||
Sbjct: 687 ttagtaataataat 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_p16.g1 MSMg01no344_p16.g1 CHROMAT_FILE:
MSMg01no344_p16.g1 PHD_FILE: MSMg01no344_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:20 2005
         (457 letters)



>mm_chr9_31607718_31608574
          Length = 857

 Score =  806 bits (417), Expect = 0.0
 Identities = 447/457 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaggagttcatttgtgtcctcgttagttttaaaaatatttttataatcactctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atttaggagttcatttgtgtcctcgttagttttaaaaatatttttataatcactctttta 596

                                                                       
Query: 61  aactttaagattttatctatttgactgtcattgggagccattactgtgggactgacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aactttaagattttatctatttgactgtcattgggagccattactgtgggactgacattt 536

                                                                       
Query: 121 ttcagggggaacatcatatggccttgctttctgttttattaatgtgcttggacttaagca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 ttcagggggaacatcatatggccttgctttctcttttattaatgtgcttggacttaagca 476

                                                                       
Query: 181 tatgcggctattccactgactcactgtaattcattgttttatgggctgtattgattgagt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tatacggctattccactgactcactgtaattcattgttttatgggctgtattgattgagt 416

                                                                       
Query: 241 tgatttacttgcaatatccagttggggctccattgtgatggggttgaggtggatagttca 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgaagtacttgcaatatccagttggggctccattgtgatggggttgaggtggatagttca 356

                                                                       
Query: 301 taagttaaacactgaatccatgtgctcagtgtaagcaaccccacagtgaagccactgaat 360
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 355 taagttaaacactgaatccatgtgctcagtgtaagcaagggcacagtgaagccactgaat 296

                                                                       
Query: 361 tagaccactccgtgggtaaaaacaaaggtttactcaaactgccaaggcagagagagagag 420
           |||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 295 tagaccactccgtgggtggaaacaaaggtttactcaaactgccaaagcagagagagagag 236

                                                
Query: 421 agagagagagagagagagagagagagagagagagaga 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 235 agagagagagagagagagagagagagagagagagaga 199


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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