NNNNTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACCAGGTTTGCCCCTTTCCAGTGTGTTTAGCAAGA
ACCATCAATGGCTCAGACGTCTTCATGTGCAGACTCTTGCCTGCCTGGAA
TCCTAGACTTACCCTCCTTGTAAGATTGTACAGTTCTTGGTCTCTTCTCT
CAGAAAACAAATTGGTTATTTTCAATATGGTAAGAACATTACAATCCAAA
AAGCTTTCTCCCCCCACCCCCAAGGGCTACTATATTCTTTGGGCTATATA
AATCCATGTTCAATTTTATATAACACAAAAGGCTCCAGAGCCCTTAAGAT
GCCTATACATTCTAAAATACTTTCTTACCTTTTGTAGAAGCCCTTACATA
GGACTGTCTGCCTTTAGATTACACCAGTGTTCGTAATCTTCATTTTAAAA
CCCGTTTTCTTTCTTTTTCTTAAATTTTATTTTATTTTTAATTTATTTTT
TACACTCCATATTTCATTCCACACCTTCCCATTCACCCTCTGTCTGGCTC
ACATCTGACACATCCTCCCCGCCCCACTTCATCTCCAATTGAATGCCCCC
CCTACCCCCCCCCAATTTGAATCCTAAATTCCTGGGCCCCCAGGCTCTTG
AGGTTAAGGGCCCCATCTCCTGATGAACAAGACCCCCAAACCTCTCTTTT
ATTGGTTTGTGGGGCCCCCATACCACCGGGTAATCTTCCCCCTGTGGGGG
CACCCCTTTCTAAAAAACTTGCGGCCCAAA

NCCCCATTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCTTGAAAGTGC
CAGGAGTGGAATACCTCCCCATGAACTGTTGAGCAGGGGTGTTCCAGAGT
TCTTCCTAACAATACAAGCTATTACGATTGCTCTTGATGATCCATCCAGA
ACTTGATGCTAAGACTTATTGTTGAAGACAGCACACACGTTGGCCAGAAG
ACTTGGAGAAACATGCTGGTACTGACTGGGAATCTTTTTCCCTGCTGGCT
AGATTTCAGAATACTGGACATTGCACAATAACAACCACCCTGGCAAGATA
TGCTCATGAATGTACTAGTAGTATATTTGGGGGCAACCATCTGCTTTTTG
ATTGAATTTAAGGCCTATTATACACCTGGTGCTGTAAATCTGACCAAGAA
CCCGTAGTAGCCTGTGAGTTCACAGTCCTGCTACTATTATTTTGCTAAAA
TATATCAAATTGCCCTCTTAACACATATCTCCGTAACCTAAATTAACACA
GCCCCCCAATCTTTGTAAAAAAAATTCCCTGATTGTTTGGAAATGTTGGT
TTAAAGGTAAAAACCTCCAACTCTGGTAAATGTGTCTAATTGTCCTTTGT
AGAAATCTTTTTTTATTGCGCCTTCTCTCAGGTTTTTGTGTGAATCCTCT
CTCTATAAGTGCCAAAAAATTTTTTCTTACCTCCCCATCTTCTTTATTCT
ATCCTCGCATGTCCTTGTTCATTTGCTTTCTTCCCCATAGCTTGTGATTG
TTCGG

Query= MSMg01no345_d24.b1 MSMg01no345_d24.b1 CHROMAT_FILE:
MSMg01no345_d24.b1 PHD_FILE: MSMg01no345_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:40 2005
         (440 letters)



>mm_chr9_46799079_46799918
          Length = 840

 Score =  804 bits (416), Expect = 0.0
 Identities = 431/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaccaggtttgcccctttccagtgtgtttagcaagaaccatcaatggctcagac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccaggttagcccctttccagtgtgtttagcaagaaccatcaatggctcagac 264

                                                                       
Query: 65  gtcttcatgtgcagactcttgcctgcctggaatcctagacttaccctccttgtaagattg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttcatgtgctgactcttgcctgcctggaatcctagacttaccctccttgtaagattg 324

                                                                       
Query: 125 tacagttcttggtctcttctctcagaaaacaaattggttattttcaatatggtaagaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacagttcttggtctcttctctcagaaaacaaattggttattttcaatatggtaagaaca 384

                                                                       
Query: 185 ttacaatccaaaaagctttctccccccacccccaagggctactatattctttgggctata 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 ttacaatccaaaaagctttctccccccccccccaagggctactatattctttgggctata 444

                                                                       
Query: 245 taaatccatgttcaattttatataacacaaaaggctccagagcccttaagatgcctatac 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaatccatgttcgattttatataacacaaaaggctccagagcccttaagatgcctatac 504

                                                                       
Query: 305 attctaaaatactttcttaccttttgtagaagcccttacataggactgtctgcctttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attctaaaatactttcttaccttttgtagaagcccttacataggactgtctgcctttaga 564

                                                                       
Query: 365 ttacaccagtgttcgtaatcttcattttaaaacccgttttctttctttttcttaaatttt 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttacaccagtgttcataatcttcattttaaaacccgttttctttctttttcttaaatttt 624

                           
Query: 425 attttatttttaattt 440
           ||||||||||||||||
Sbjct: 625 attttatttttaattt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)