BAC Information

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BAC

Clone NameMSMg01-347P14
Chromosome9 (Build37)
Map Location 59,064,126 - 59,064,512
singlet/doubletsinglet
Overlap genenone
Upstream genePml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347P14.T7 (MSMg01no347_p14.b1)MSMg01-347P14.TJ (MSMg01no347_p14.g1)
ACCAG460185AG460186
length764905
length of high quality
(start - end)
387 (70 - 456)30 (780 - 809)
definitionCHROMAT_FILE: MSMg01no347_p14.b1 PHD_FILE: MSMg01no347_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:07 2005CHROMAT_FILE: MSMg01no347_p14.g1 PHD_FILE: MSMg01no347_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCCTAGAGTATGCCGTGCTGAATTAGTTTAGTCAGGTAACTCACAA
GGCAAAACCTACAAGGTTATGTACTTACCACCTTAGTTCAACTTGGGGCA
AGAATACATCCTGGCATATTTCCTGCCTATATCTCCCAACTGTGTGTGAT
CAAGCATATCCTCTGTGGTTGGGACAACCAACCTTGTTTACTGAAGTGAG
AACACATGGCTTGTTAGCTTACATGAATAACAGAGCCCAGCATTCCAGGA
AGTTATCTATCTTTGGGCAGATGGGGCTAACAGGTTAACTTTAGCCATCA
CATCAGAGCTCATTGTTTTAGTGAGCTAACCAGCTTACTGTAGGAGTTCC
CCATCTCCTCCCCTGTTCGACTCCTTCTCACTGCCATGCCAACTTAGCTT
TTACAAGGCACAGAGGATCCGAACCCTGGTCCTCACATTTGTGTTGTTAG
CGTGATGGAACTCTATTAGCTACCTTCCCTGCTCCTCTGTAGTTCTAGAA
CACTCATGTGGATTGGCGTATCTTCCCATTTTCTTCCTTCTCTCAATAGT
GGACTCACCTATTTCACCTTCCTTTTCCCCATGCGCTTCACTCCTTTTCG
CTTTCCACTTCTCCCTTTTCTATCATCCTTTCTATTTTTCACTTTCTTCC
ACTTCTCATTACACCTCATTTATTCCCCTTTCCTTTCCTTATCCTTTTTT
TTTCCCTTCTCTTT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTATCCGCGNNAATTTCTTTACANTCTATTTTAN
NCTTTTCCNCAGTTTGTCANAAAATGCTTTTCATTTCNTATACTTCTANG
NCTCTTTAAAGCTTCTAGTTTTTTGTGATCTGNTGATAGNTGCTTTGTGG
TGGTGGCTNAAGTTAGTTNNTCATGGAAAAAAAAGAGTTTTNNNNNNNNN
NNNNNNNNTCTTTTNNNNNCCTTCNNNNNNCCTCCCCCNNNNNNNNNTTT
TTTTTCCCCCCTNCTCCCCCCCCCCCCCCCNNCCCNNCCCCCCCCCCCCT
GGNNNTTTTTCCCCCCCCCCCCCCCCCCCTNTTNNCCCTCTCCTCCCCCC
CCCCCCCCCCTCTTNNNCAAACCCNNNNNNNNNNNNNCNCCCCCCCTTTC
CCCCCCCCNNNNNTTTTTCTCCCTTTTCTCCCCCCTTTNNNNTNCTNCCT
CCTTTTTTCCCCCCTCCCCNNCCCCNCCCCNNNTNNCCNNNCNNTCCCCC
CNCCTCCCCNNCCTTCTTTNCTTCCCCNCCNCCCCCCNCCCCCNNNNCCC
CTCTCTTTCCTCTTTTTTCTCCCNNNCCNCCCCCCCCCCCCCTCCCCCCT
CCCCCCCCCCCCTCNCTNTTTTNCCNCCTTTTCTTCCTTCCCCNNCCCNN
CNNCNCCCCCCCCCCCCCCCCCCCCTTTCCCCTCTTNTCCCCCCCCCCTT
TTTTCCCCCCTTCCTCCCNCCTCCCCTCTTCCCCCCCTCTTCCTCCCCCC
CCCCCCCTCTTTTTCCTTTCTCCNCCCCNCCCCCCCTTTTTTTNCCCCCC
CCTCNCNCCTTTCCNCNCCCTCTTCCCCTTTCCCTCCTTCTTTTTTTTTT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_p14.b1 MSMg01no347_p14.b1 CHROMAT_FILE:
MSMg01no347_p14.b1 PHD_FILE: MSMg01no347_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:07 2005
         (387 letters)



>mm_chr9_59063926_59064712
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgaattagtttagtcaggtaactcacaaggcaaaacctacaaggttatgtacttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgctgaattagtttagtcaggtaactcacaaggcaaaacctacaaggttatgtacttacc 528

                                                                       
Query: 61  accttagttcaacttggggcaagaatacatcctggcatatttcctgcctatatctcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 accttagttcaacttggggcaagaatacatcctggcatatttcctgcctatatctcccaa 468

                                                                       
Query: 121 ctgtgtgtgatcaagcatatcctctgtggttgggacaaccaaccttgtttactgaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctgtgtgtgatcaagcatatcctctgtggttgggacaaccaaccttgtttactgaagtga 408

                                                                       
Query: 181 gaacacatggcttgttagcttacatgaataacagagcccagcattccaggaagttatcta 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 407 gaacacatggcttgttagcttacatgaataacagaccccagcattccaggaagttatcta 348

                                                                       
Query: 241 tctttgggcagatggggctaacaggttaactttagccatcacatcagagctcattgtttt 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 347 tctttgggcagatggggctaacaggttaactttagccatcgcatcagagctcattgtttt 288

                                                                       
Query: 301 agtgagctaaccagcttactgtaggagttccccatctcctcccctgttcgactccttctc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 287 agtgagctaaccagcttactgtaggagttccctatctcctcccctgttcgactccttctc 228

                                      
Query: 361 actgccatgccaacttagcttttacaa 387
           |||||||||||||||||||||||||||
Sbjct: 227 actgccatgccaacttagcttttacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)