XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
TTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCC
TGAGTGCTGGGATTAAAGACGTGCGCCACCACACCCAGCTGAAAAGATTT
CTTGATAATTCATTTCACTTGAGACCCATCTCAATGGTAAGAATTTTTCT
GTATTTAGTCCTATTTGAATTCCAGAATGATCTTTTGAGGTTTTTGGTCG
CTACTCTCCAGGCCTTTGGTACTGCTGGTCTATCCTCGGCTGAATCCTCC
TGAAAGTCCCGTGTAAATCCCCACAAGTCTCTGAATGGCTTTTTTCCTTC
CCGGCATTCTCCTTTGCAAATAGAACCACTTTGGCCTCCTTGCTCTCTGT
TCTGTCTTCTCAAGTCAAGGGCATAGCTGAGCTTCATCTGGCTTCCCCCA
TGAGTGGAAGATGCTCTCTGCACGACAGCTTGTGTCAGCATAGGAGTCAC
CATGGTTGTCTTGCATCTCAGAGATCCGTCTCACAGCGAATTGTCTAATA
GCTCAAGGACCACGGCTTCATGTATTTTACTGGCTTTCCAATTTTTTTTT
CCCCATAGCGGGGGACACATCCAGATTCCACTATTCCATTTTGGGTGGAG
GCAGAAGCCTTTGTTTTGGACTTCCTTTTGCACCACATAGCCTGAGTAAC
TTTCCATTGATTACCATGGAGAAAACTAGCTTAAACACAGAACCCCTGAC
TAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGACACCATGAAAAGACCAAAT
GTAAAAATAATAGGAATAGAGGAAGAAGAAGAATCACAGCTCAAAGGCCC
AGAAGATATTTTGAACAAAATAATAGGAGAAAAATTCCCTAACCAAAAGG
AGGGGATACATTTGAAGTATAAGAAGCTTATAGATAACCAAATAGATTGA
ACCAGAAAAGAAAATCTCCTCACCACATAATAATCAAAACATTAAATATA
CACAAAAGAAAGAATGTTGAAAGCTACAAATGAAAAGGGCCAAGTAACCT
ATAAGAGCAGACCTATTAGAATTACACCTGACTTCTCAGTGGAGACTCTA
AAAACCAGAAAGGGCCTGGACAGATGTGCCACAGACTCTAAGAGACCACA
GATGTCAGCCCAGATTACTATACCCAGCAAAACTTTAAATCACTATAGAT
TTATAAAATAAGAGATTCTGTAATAAAGTCAAAATTAAATAATTTCTAGC
TACAAATCCAGCCCTACAGAATGTGCGAGAAAGAANAGTCCAGTGTAAGG
AAGTTAACTACACCCATAGGAAATAAATAATCCCACACCAGTAAAATCAA
AATAGGGGAAGCACACAGACACACACACATACACACACACACACACACAC
ACACACACACACACACACACACTCACACACACACTCACTCAAAAAAACAA
TGAAATAACGGGAATCACC

Query= MSMg01no349_l04.b1 MSMg01no349_l04.b1 CHROMAT_FILE:
MSMg01no349_l04.b1 PHD_FILE: MSMg01no349_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:23 2005
         (571 letters)



>mm_chr9_96935485_96936454
          Length = 970

 Score =  998 bits (516), Expect = 0.0
 Identities = 555/568 (97%), Gaps = 2/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcc 63
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaactcactttgtagaccaggttggcctcaaactcagaaatccacctgcctctgcctcc 264

                                                                       
Query: 64  tgagtgctgggattaaagacgtgcgccaccacacccagctgaaaagatttcttgataatt 123
           |||||||||| |||||||  |||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tgagtgctgg-attaaaggtgtgcgccaccacgcccagctgaaaagatttcttgataatt 323

                                                                       
Query: 124 catttcacttgagacccatctcaatggtaagaatttttctgtatttagtcctatttgaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catttcacttgagacccatctcaatggtaagaatttttctgtatttagtcctatttgaat 383

                                                                       
Query: 184 tccagaatgatcttttgaggtttttggtcgctactctccaggcctttggtactgctggtc 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccagaatgatcttctgaggtttttggtcgctactctccaggcctttggtactgctggtc 443

                                                                       
Query: 244 tatcctcggctgaatcctcctgaaagtcccgtgtaaatccccacaagtctctgaatggct 303
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 tatcctcggctgaatcctcccgaaagtcccgtgtaaatccccacaagcctctgaatggct 503

                                                                       
Query: 304 tttttccttcccggcattctcctttgcaaatagaaccactttggcctccttgctctctgt 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttt-ccttcccggcattctcctttgcaaatagaaccactttggcctccttgctctctgt 562

                                                                       
Query: 364 tctgtcttctcaagtcaagggcatagctgagcttcatctggcttcccccatgagtggaag 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgtcttctcaagtcaaggacatagctgagcttcatctggcttcccccatgagtggaag 622

                                                                       
Query: 424 atgctctctgcacgacagcttgtgtcagcataggagtcaccatggttgtcttgcatctca 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 atgctctctgcacgacagcttgtgtcagcgtaggagtcaccatggttgtcttgcatctca 682

                                                                       
Query: 484 gagatccgtctcacagcgaattgtctaatagctcaaggaccacggcttcatgtattttac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gagatccgtctcacagcgaattgtctaatagctcaaggaccacggcttcatgtattttac 742

                                       
Query: 544 tggctttccaatttttttttccccatag 571
           ||||||||| ||||||||||||||||||
Sbjct: 743 tggctttcccatttttttttccccatag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)